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Cow genome map

           
Conread name:
           
rcsk07_i5.y1
        

               
Conread position:
               
1-328
               

               
Cow position:
               
chr21:10866704-10867026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr21:5636890-5636708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr21:28944533-28944348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr21:42348847-42348657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr21:33210029-33210223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr21:23821998-23822193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 23
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr21:36819382-36819185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
159, 30
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr21:5596977-5597178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr21:7132632-7132439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr21:41957343-41957148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-205
               

               
Cow position:
               
chr21:45375446-45375650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr21:40244265-40244469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
55, 60
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr21:15445248-15445043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 91
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr21:33791537-33791336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
120, 71
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr21:10882264-10882471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 149
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr21:28993795-28993590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
151, 143
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr21:20925676-20925474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 75
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr21:24864987-24865190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr21:41597646-41597853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 149
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr21:45330777-45330568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
129, 150
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr21:18494796-18495003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr21:29002331-29002124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr21:42905547-42905342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
122, 56
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr21:81901-82115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 157
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr21:23478888-23478681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr21:7156586-7156799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
3-215
               

               
Cow position:
               
chr21:41974548-41974337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr21:5425811-5426016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr21:27743573-27743791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
3-225
               

               
Cow position:
               
chr21:44093610-44093829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr21:48484613-48484396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr21:29942838-29943063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
204, 16
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr21:31253367-31253601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr21:49662287-49662054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
5, 46
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chr21:32665941-32665698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
246, 16
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr21:10514638-10514888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
244, 27
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr21:17674405-17674150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr21:42500863-42501138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 243
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr21:27229964-27229691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 75
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr21:31691309-31691586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
244, 154
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr21:3236361-3236626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
196, 38
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr21:20262503-20262231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
261, 77
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr21:24222707-24222433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
247, 30
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr21:30150435-30150159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
124, 83
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr21:23150189-23149915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
240, 62
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:30607257-30606980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
130, 90
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:41620950-41621232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 148
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr21:19363633-19363347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
244, 92
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr21:28998074-28997785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
126, 10
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr21:18845184-18844890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr21:12087422-12087712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
134, 75
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:725061-724757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
88, 149
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:6833883-6834177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:7564491-7564179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:13035216-13034910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:13488350-13488655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
224, 93
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:33729265-33729558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
247, 78
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr21:36297309-36297621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 161
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr21:28626072-28626366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
247, 24
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr21:44515105-44515393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr21:1483320-1483623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
261, 122
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr21:40786501-40786822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 194
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr21:13048366-13048047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
143, 77
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr21:40899167-40899485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
251, 186
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr21:42053434-42053133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:5426774-5427088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:27863689-27863365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
125, 145
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:30849108-30848793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
196, 30
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:43357430-43357108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr21:47465290-47464971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
244, 56
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:33552-33868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:641415-641736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:29069498-29069177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
244, 75
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:33727630-33727310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
117, 73
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:33947416-33947105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
247, 35
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:34391142-34390826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:42135793-42135467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
214, 147
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:46849292-46848979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:47764282-47763969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:47823441-47823120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
196, 75
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:395706-396019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
205, 48
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:1058907-1059227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 91
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:5898567-5898250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
237, 85
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:21169664-21169344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
128, 93
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:22860832-22861153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
242, 83
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:23322253-23321926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
151, 212
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:32339906-32339588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 41
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:35061919-35062234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
244, 131
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr21:37345271-37344949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
143, 87
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:4098706-4099022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
211, 73
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:4276761-4276451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:4723310-4723633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:15742260-15741932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:15911231-15911553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
244, 67
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:23785859-23786184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
8, 68
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:25800239-25800552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
211, 10
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:34565382-34565062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 122
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:35997004-35997324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 77
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:38449621-38449295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
101, 95
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:42384336-42384661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 148
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:46242409-46242088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
4-205
               

               
Cow position:
               
chr21:28512364-28512555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-208
               

               
Cow position:
               
chr21:393853-394050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr21:34658866-34659069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 66
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr21:12973421-12973197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
150, 74
               

               
Conread position:
               
4-261
               

               
Cow position:
               
chr21:28211028-28211277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
82, 122
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr21:44754945-44754654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
246, 121
               

               
Conread position:
               
4-323
               

               
Cow position:
               
chr21:10000912-10001223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 43
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr21:9416074-9416400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
124, 148
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr21:23801290-23800975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
243, 74
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr21:42841761-42841444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
243, 74
               

               
Conread position:
               
5-277
               

               
Cow position:
               
chr21:29484816-29485083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
242, 73
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr21:11645136-11644838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
206, 95
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr21:33982976-33982682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
242, 128
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr21:18790723-18790417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
5-328
               

               
Cow position:
               
chr21:31662293-31662620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 174
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr21:39888909-39888644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
240, 51
               

               
Conread position:
               
10-210
               

               
Cow position:
               
chr21:36793730-36793925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 68
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr21:20260480-20260170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
13-282
               

               
Cow position:
               
chr21:24642359-24642627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
13-327
               

               
Cow position:
               
chr21:39401435-39401742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
235, 59
               

               
Conread position:
               
13-328
               

               
Cow position:
               
chr21:9353281-9353600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
234, 124
               

               
Conread position:
               
14-317
               

               
Cow position:
               
chr21:23499981-23499687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
193, 66
               

               
Conread position:
               
16-261
               

               
Cow position:
               
chr21:41455107-41454866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
227, 123
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr21:13840167-13840434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 34
               

               
Conread position:
               
17-283
               

               
Cow position:
               
chr21:15584565-15584312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
233, 18
               

               
Conread position:
               
17-284
               

               
Cow position:
               
chr21:17174989-17175251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
110, 53
               

               
Conread position:
               
17-323
               

               
Cow position:
               
chr21:25286354-25286664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
191, 210
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr21:12801902-12801598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
230, 69
               

               
Conread position:
               
17-327
               

               
Cow position:
               
chr21:28244320-28244622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
240, 59
               

               
Conread position:
               
17-327
               

               
Cow position:
               
chr21:40589638-40589330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
193, 108
               

               
Conread position:
               
19-203
               

               
Cow position:
               
chr21:27624559-27624735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
19-211
               

               
Cow position:
               
chr21:912120-911933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
20-212
               

               
Cow position:
               
chr21:8187666-8187470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr21:39450320-39450133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
112, 131
               

               
Conread position:
               
21-304
               

               
Cow position:
               
chr21:10823402-10823687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 188
               

               
Conread position:
               
23-327
               

               
Cow position:
               
chr21:20160534-20160828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
189, 47
               

               
Conread position:
               
26-245
               

               
Cow position:
               
chr21:17856398-17856608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
27-325
               

               
Cow position:
               
chr21:957521-957822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 123
               

               
Conread position:
               
27-328
               

               
Cow position:
               
chr21:6058785-6058495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
27-328
               

               
Cow position:
               
chr21:10005031-10004733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
223, 67
               

               
Conread position:
               
28-324
               

               
Cow position:
               
chr21:20418833-20418533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
29-205
               

               
Cow position:
               
chr21:37886268-37886438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
30-203
               

               
Cow position:
               
chr21:41583127-41583298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
36-229
               

               
Cow position:
               
chr21:11521186-11521000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr21:12462107-12461839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr21:17875331-17875153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 115
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr21:20152812-20153085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 53
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr21:29978898-29978611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
40-324
               

               
Cow position:
               
chr21:26614802-26614512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
42-324
               

               
Cow position:
               
chr21:22353365-22353089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
220, 113
               

               
Conread position:
               
42-328
               

               
Cow position:
               
chr21:17428368-17428648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
220, 113
               

               
Conread position:
               
46-206
               

               
Cow position:
               
chr21:27810278-27810437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
47-209
               

               
Cow position:
               
chr21:2412635-2412794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
47-256
               

               
Cow position:
               
chr21:21077197-21077403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
200, 108
               

               
Conread position:
               
51-304
               

               
Cow position:
               
chr21:36789672-36789923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
160, 74
               

               
Conread position:
               
52-328
               

               
Cow position:
               
chr21:6316085-6316366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
59, 188
               

               
Conread position:
               
57-305
               

               
Cow position:
               
chr21:35354415-35354660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
142, 8
               

               
Conread position:
               
58-321
               

               
Cow position:
               
chr21:18155688-18155420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
60-239
               

               
Cow position:
               
chr21:34141301-34141120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
152, 65
               

               
Conread position:
               
60-328
               

               
Cow position:
               
chr21:31661889-31662156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
61-321
               

               
Cow position:
               
chr21:24094867-24094614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 143
               

               
Conread position:
               
61-328
               

               
Cow position:
               
chr21:40168745-40168473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 92
               

               
Conread position:
               
62-174
               

               
Cow position:
               
chr21:38929497-38929385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
68-256
               

               
Cow position:
               
chr21:18041956-18041770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 87
               

               
Conread position:
               
68-323
               

               
Cow position:
               
chr21:30835260-30835511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 22
               

               
Conread position:
               
69-320
               

               
Cow position:
               
chr21:10561691-10561438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
176, 81
               

               
Conread position:
               
72-327
               

               
Cow position:
               
chr21:9940299-9940036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr21:32904258-32904006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
75-210
               

               
Cow position:
               
chr21:41514703-41514838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
77-210
               

               
Cow position:
               
chr21:4568186-4568317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
77-324
               

               
Cow position:
               
chr21:49649535-49649777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chr21:8206674-8206919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
132, 53
               

               
Conread position:
               
79-328
               

               
Cow position:
               
chr21:21181079-21181330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
143, 147
               

               
Conread position:
               
100-323
               

               
Cow position:
               
chr21:46552182-46551955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 51
               

               
Conread position:
               
104-237
               

               
Cow position:
               
chr21:35044381-35044243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
107-304
               

               
Cow position:
               
chr21:44214055-44214254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr21:47715607-47715395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 153
               

               
Conread position:
               
113-328
               

               
Cow position:
               
chr21:23397908-23397694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
114-327
               

               
Cow position:
               
chr21:15544280-15544077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
192, 36
               

               
Conread position:
               
126-328
               

               
Cow position:
               
chr21:26753445-26753644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
180, 68
               
Show alignments to all cow chromosomes.