Cow genome map

Conread name: rcsk07_i5.y1

Conread position: 2-210
Cow position: chr25:23389518-23389311 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 122, 57

Conread position: 3-183
Cow position: chr25:17702198-17702030 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 5, 67

Conread position: 3-183
Cow position: chr25:26238636-26238811 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 3-192
Cow position: chr25:26757204-26757386 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 3-205
Cow position: chr25:30035313-30035508 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 3-209
Cow position: chr25:31732971-31732767 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 107, 0

Conread position: 3-210
Cow position: chr25:1735551-1735349 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 126, 0

Conread position: 3-210
Cow position: chr25:13569402-13569203 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 82

Conread position: 3-210
Cow position: chr25:16001755-16001557 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 3-210
Cow position: chr25:30319684-30319476 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 75

Conread position: 3-211
Cow position: chr25:9961413-9961202 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 151

Conread position: 3-211
Cow position: chr25:40321528-40321329 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 122, 0

Conread position: 3-212
Cow position: chr25:4002561-4002770 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 93

Conread position: 3-215
Cow position: chr25:10205115-10204902 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 78

Conread position: 3-215
Cow position: chr25:36779260-36779469 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 29

Conread position: 3-234
Cow position: chr25:2136116-2136346 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 88, 106

Conread position: 3-241
Cow position: chr25:8347274-8347505 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 119, 75

Conread position: 3-262
Cow position: chr25:1838005-1838254 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 130, 18

Conread position: 3-262
Cow position: chr25:7800901-7801158 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 244, 147

Conread position: 3-280
Cow position: chr25:8560634-8560907 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 204, 36

Conread position: 3-282
Cow position: chr25:21193179-21192890 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 6

Conread position: 3-282
Cow position: chr25:30279442-30279168 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 244, 110

Conread position: 3-283
Cow position: chr25:9957267-9956997 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 126, 48

Conread position: 3-286
Cow position: chr25:33260505-33260776 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 254, 75

Conread position: 3-301
Cow position: chr25:33691318-33691617 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 167

Conread position: 3-302
Cow position: chr25:14791517-14791814 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 244, 67

Conread position: 3-302
Cow position: chr25:35347669-35347963 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 225, 154

Conread position: 3-303
Cow position: chr25:25051619-25051317 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 139, 96

Conread position: 3-304
Cow position: chr25:5837201-5836895 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 236, 144

Conread position: 3-304
Cow position: chr25:20348623-20348931 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 125, 82

Conread position: 3-305
Cow position: chr25:33550271-33550574 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 239, 14

Conread position: 3-308
Cow position: chr25:24669666-24669378 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 3-312
Cow position: chr25:2126234-2126531 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 228, 26

Conread position: 3-312
Cow position: chr25:22735887-22736185 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 69

Conread position: 3-321
Cow position: chr25:6464264-6463951 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 125, 58

Conread position: 3-321
Cow position: chr25:17566352-17566667 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 143, 75

Conread position: 3-321
Cow position: chr25:33959495-33959172 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 33

Conread position: 3-323
Cow position: chr25:20076258-20076579 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 81

Conread position: 3-323
Cow position: chr25:24136670-24136359 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 296, 10

Conread position: 3-323
Cow position: chr25:27504419-27504116 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 103, 212

Conread position: 3-323
Cow position: chr25:28188184-28187863 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 121, 93

Conread position: 3-323
Cow position: chr25:40957222-40956903 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 43

Conread position: 3-324
Cow position: chr25:7641688-7641367 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 212, 10

Conread position: 3-324
Cow position: chr25:18000751-18000448 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 259, 83

Conread position: 3-324
Cow position: chr25:22910079-22909774 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 243, 16

Conread position: 3-324
Cow position: chr25:26654671-26654990 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 126, 69

Conread position: 3-324
Cow position: chr25:27535144-27534836 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 72

Conread position: 3-324
Cow position: chr25:36081638-36081958 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 258, 147

Conread position: 3-324
Cow position: chr25:38135513-38135833 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 244, 62

Conread position: 3-327
Cow position: chr25:18265928-18266250 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 249, 58

Conread position: 3-327
Cow position: chr25:20007912-20008219 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 205, 62

Conread position: 3-328
Cow position: chr25:8576458-8576781 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 75

Conread position: 3-328
Cow position: chr25:10012284-10011972 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 158, 97

Conread position: 3-328
Cow position: chr25:10748737-10748414 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 17, 10

Conread position: 3-328
Cow position: chr25:20496305-20496625 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 126, 54

Conread position: 3-328
Cow position: chr25:20625166-20624849 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 108, 123

Conread position: 3-328
Cow position: chr25:24405971-24405647 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 83

Conread position: 4-205
Cow position: chr25:18206534-18206340 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 122, 91

Conread position: 4-208
Cow position: chr25:6424822-6424622 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 130, 0

Conread position: 4-210
Cow position: chr25:10365986-10365785 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 125, 68

Conread position: 4-286
Cow position: chr25:36535669-36535389 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 34

Conread position: 4-303
Cow position: chr25:21191253-21191550 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 203, 121

Conread position: 4-304
Cow position: chr25:12081542-12081260 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 26

Conread position: 4-319
Cow position: chr25:14570135-14570451 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 66, 47

Conread position: 4-328
Cow position: chr25:14467319-14467007 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 25

Conread position: 5-208
Cow position: chr25:12204237-12204435 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 126, 73

Conread position: 7-209
Cow position: chr25:395124-395319 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 7-237
Cow position: chr25:20785815-20785588 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 192, 79

Conread position: 10-324
Cow position: chr25:6961378-6961070 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 237, 43

Conread position: 13-324
Cow position: chr25:29215614-29215313 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 293, 74

Conread position: 14-286
Cow position: chr25:17365481-17365214 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 233, 42

Conread position: 17-209
Cow position: chr25:36033215-36033404 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 79, 0

Conread position: 17-283
Cow position: chr25:12239369-12239106 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 190, 61

Conread position: 17-304
Cow position: chr25:10218272-10217987 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 19, 42

Conread position: 17-312
Cow position: chr25:22575742-22575454 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 246, 120

Conread position: 19-260
Cow position: chr25:12899536-12899772 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 28-328
Cow position: chr25:8512305-8512006 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 234, 199

Conread position: 37-304
Cow position: chr25:3145639-3145906 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 114

Conread position: 37-324
Cow position: chr25:13272368-13272652 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 191
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 210, 102

Conread position: 38-327
Cow position: chr25:20133515-20133228 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 205, 34

Conread position: 46-205
Cow position: chr25:35110322-35110163 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 105

Conread position: 46-221
Cow position: chr25:13672196-13672371 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 107

Conread position: 46-321
Cow position: chr25:17342257-17342538 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 82, 107

Conread position: 51-327
Cow position: chr25:18905694-18905971 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 78, 100

Conread position: 52-328
Cow position: chr25:16007603-16007868 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 147, 0

Conread position: 57-328
Cow position: chr25:26457865-26457591 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 37

Conread position: 58-324
Cow position: chr25:32606506-32606244 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 145, 181

Conread position: 61-328
Cow position: chr25:11989695-11989427 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 93, 186

Conread position: 63-206
Cow position: chr25:13472069-13471932 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 74-323
Cow position: chr25:18161122-18161367 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 35

Conread position: 75-321
Cow position: chr25:5920771-5921024 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 78

Conread position: 76-328
Cow position: chr25:16560339-16560087 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 19

Conread position: 78-324
Cow position: chr25:21893174-21893421 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 170, 32

Conread position: 83-324
Cow position: chr25:5407574-5407825 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 123

Conread position: 84-211
Cow position: chr25:35333000-35333127 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 68

Conread position: 96-328
Cow position: chr25:36501384-36501154 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 111

Conread position: 107-323
Cow position: chr25:16691528-16691742 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 143, 110

Conread position: 110-328
Cow position: chr25:34379237-34379018 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 137, 12

Conread position: 119-328
Cow position: chr25:12932507-12932713 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 84, 75

Conread position: 127-328
Cow position: chr25:14075187-14075390 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 120, 58

Conread position: 129-328
Cow position: chr25:26240425-26240625 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 121, 17

Conread position: 139-328
Cow position: chr25:8080619-8080813 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 111, 100

Conread position: 152-314
Cow position: chr25:33205171-33205005 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 98, 83

Show alignments to all cow chromosomes.