Cow genome map
| Conread name: | rcsk07_i5.y1 |
| Conread position: | 1-207 |
| Cow position: | chr26:31889869-31890077 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 149 |
| Conread position: | 1-304 |
| Cow position: | chr26:4854319-4854626 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 75 |
| Conread position: | 1-304 |
| Cow position: | chr26:33112605-33112305 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 1-321 |
| Cow position: | chr26:13801893-13802210 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 246, 120 |
| Conread position: | 3-163 |
| Cow position: | chr26:10491568-10491726 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 78 |
| Conread position: | 3-182 |
| Cow position: | chr26:9102616-9102440 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 126, 85 |
| Conread position: | 3-183 |
| Cow position: | chr26:3186391-3186563 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-183 |
| Cow position: | chr26:6793725-6793902 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 3-194 |
| Cow position: | chr26:7961420-7961602 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-203 |
| Cow position: | chr26:19769301-19769105 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 3-205 |
| Cow position: | chr26:9867331-9867136 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-207 |
| Cow position: | chr26:19459456-19459668 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 157 |
| Conread position: | 3-208 |
| Cow position: | chr26:13270894-13270689 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 126, 148 |
| Conread position: | 3-209 |
| Cow position: | chr26:6827950-6828155 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-210 |
| Cow position: | chr26:2246733-2246941 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-211 |
| Cow position: | chr26:2389268-2389064 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 3-211 |
| Cow position: | chr26:32659667-32659465 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 3-237 |
| Cow position: | chr26:17675946-17675723 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-262 |
| Cow position: | chr26:31779258-31779518 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 125, 109 |
| Conread position: | 3-262 |
| Cow position: | chr26:32688213-32688472 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 189 |
| Conread position: | 3-293 |
| Cow position: | chr26:798514-798228 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 3-298 |
| Cow position: | chr26:13021365-13021070 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 244, 152 |
| Conread position: | 3-303 |
| Cow position: | chr26:33857414-33857114 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 146 |
| Conread position: | 3-304 |
| Cow position: | chr26:3706584-3706873 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 207, 118 |
| Conread position: | 3-304 |
| Cow position: | chr26:21991896-21992183 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 126, 69 |
| Conread position: | 3-304 |
| Cow position: | chr26:27491719-27491420 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 243, 14 |
| Conread position: | 3-304 |
| Cow position: | chr26:32898087-32897788 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 244, 75 |
| Conread position: | 3-304 |
| Cow position: | chr26:33096782-33096477 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 150 |
| Conread position: | 3-318 |
| Cow position: | chr26:20129891-20129581 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 153 |
| Conread position: | 3-323 |
| Cow position: | chr26:8810916-8811228 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 208, 61 |
| Conread position: | 3-324 |
| Cow position: | chr26:5246704-5246376 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 97 |
| Conread position: | 3-324 |
| Cow position: | chr26:8700266-8699945 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 135, 149 |
| Conread position: | 3-324 |
| Cow position: | chr26:21242887-21243197 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 3-324 |
| Cow position: | chr26:23272567-23272875 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 3-327 |
| Cow position: | chr26:613888-613568 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 3-327 |
| Cow position: | chr26:19774520-19774194 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 125, 93 |
| Conread position: | 3-327 |
| Cow position: | chr26:26294404-26294091 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 208, 38 |
| Conread position: | 3-328 |
| Cow position: | chr26:2770055-2769737 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 244, 56 |
| Conread position: | 3-328 |
| Cow position: | chr26:4748074-4747755 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 102 |
| Conread position: | 3-328 |
| Cow position: | chr26:7103252-7102940 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 3-328 |
| Cow position: | chr26:9064131-9064447 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 259, 98 |
| Conread position: | 3-328 |
| Cow position: | chr26:9632585-9632258 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 10 |
| Conread position: | 3-328 |
| Cow position: | chr26:9666623-9666309 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 213, 70 |
| Conread position: | 3-328 |
| Cow position: | chr26:12668982-12669305 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 4-207 |
| Cow position: | chr26:21351472-21351672 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 4-211 |
| Cow position: | chr26:25737256-25737462 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 130, 74 |
| Conread position: | 4-216 |
| Cow position: | chr26:10813995-10814192 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 4-237 |
| Cow position: | chr26:18692217-18692438 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 5-199 |
| Cow position: | chr26:4664643-4664457 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 6-283 |
| Cow position: | chr26:27163234-27163510 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 6-318 |
| Cow position: | chr26:17288993-17289296 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 199, 67 |
| Conread position: | 6-328 |
| Cow position: | chr26:33227593-33227897 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 7-327 |
| Cow position: | chr26:16549768-16550093 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 144 |
| Conread position: | 7-328 |
| Cow position: | chr26:29353723-29353406 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 247 |
| Conread position: | 10-202 |
| Cow position: | chr26:783143-782955 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 10-328 |
| Cow position: | chr26:2610011-2609700 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 17-212 |
| Cow position: | chr26:3072165-3071977 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 17-303 |
| Cow position: | chr26:10764017-10764292 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 247, 112 |
| Conread position: | 20-207 |
| Cow position: | chr26:32026569-32026383 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 20-210 |
| Cow position: | chr26:18602534-18602711 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 181, 34 |
| Conread position: | 20-300 |
| Cow position: | chr26:20013280-20013555 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 227, 58 |
| Conread position: | 21-211 |
| Cow position: | chr26:14958217-14958026 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 106, 136 |
| Conread position: | 24-304 |
| Cow position: | chr26:31605212-31605487 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 207, 27 |
| Conread position: | 26-304 |
| Cow position: | chr26:17148507-17148786 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 221, 124 |
| Conread position: | 29-327 |
| Cow position: | chr26:19110712-19111018 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 30-328 |
| Cow position: | chr26:32866077-32865786 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 217, 39 |
| Conread position: | 35-304 |
| Cow position: | chr26:23315581-23315855 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 7, 121 |
| Conread position: | 37-225 |
| Cow position: | chr26:6252665-6252853 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 114 |
| Conread position: | 37-328 |
| Cow position: | chr26:3019610-3019312 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 104, 212 |
| Conread position: | 46-323 |
| Cow position: | chr26:10292424-10292702 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 168, 58 |
| Conread position: | 51-328 |
| Cow position: | chr26:16604120-16604392 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 199, 38 |
| Conread position: | 52-328 |
| Cow position: | chr26:14924317-14924587 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 52-328 |
| Cow position: | chr26:30605530-30605261 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 221, 30 |
| Conread position: | 62-220 |
| Cow position: | chr26:14364247-14364088 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 65-304 |
| Cow position: | chr26:14578168-14578408 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 84 |
| Conread position: | 67-324 |
| Cow position: | chr26:22152070-22152329 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 77-328 |
| Cow position: | chr26:27585628-27585877 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 173, 19 |
| Conread position: | 78-324 |
| Cow position: | chr26:28251002-28251258 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 80-324 |
| Cow position: | chr26:12964839-12964595 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 167, 75 |
| Conread position: | 85-211 |
| Cow position: | chr26:10768049-10767924 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 110-328 |
| Cow position: | chr26:14905924-14905702 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 41 |
| Conread position: | 122-309 |
| Cow position: | chr26:6486755-6486564 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 125, 28 |
Show alignments to all cow chromosomes.