Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-157 |
| Cow position: | chr12:40163067-40163228 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 1-276 |
| Cow position: | chr12:38111256-38111537 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 1-284 |
| Cow position: | chr12:24206417-24206690 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 1-321 |
| Cow position: | chr12:14413876-14414172 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 1-322 |
| Cow position: | chr12:8772943-8772606 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 263 |
| Conread position: | 1-322 |
| Cow position: | chr12:33403481-33403169 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 70 |
| Conread position: | 1-325 |
| Cow position: | chr12:15259189-15258854 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 1-328 |
| Cow position: | chr12:18233377-18233046 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 1-328 |
| Cow position: | chr12:27629333-27629014 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 5, 90 |
| Conread position: | 1-335 |
| Cow position: | chr12:34491410-34491072 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 2-328 |
| Cow position: | chr12:35718531-35718207 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 4-173 |
| Cow position: | chr12:27851872-27851701 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-219 |
| Cow position: | chr12:26672693-26672909 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 158, 74 |
| Conread position: | 4-322 |
| Cow position: | chr12:9106979-9107293 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 4-323 |
| Cow position: | chr12:41337447-41337127 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-323 |
| Cow position: | chr12:42061211-42061531 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 155, 76 |
| Conread position: | 4-331 |
| Cow position: | chr12:25606222-25606563 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 5-157 |
| Cow position: | chr12:17629271-17629121 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 5-183 |
| Cow position: | chr12:22687264-22687444 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 5-204 |
| Cow position: | chr12:42283598-42283394 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 5-222 |
| Cow position: | chr12:19873691-19873900 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 189, 41 |
| Conread position: | 5-234 |
| Cow position: | chr12:21620148-21619915 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 153, 50 |
| Conread position: | 5-234 |
| Cow position: | chr12:25513443-25513671 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 5-243 |
| Cow position: | chr12:3039046-3039288 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 5-274 |
| Cow position: | chr12:20169852-20169577 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 5-284 |
| Cow position: | chr12:39356843-39357126 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 5-296 |
| Cow position: | chr12:28572234-28572526 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 5-318 |
| Cow position: | chr12:40806927-40807244 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 5-318 |
| Cow position: | chr12:44176349-44176033 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 139, 78 |
| Conread position: | 5-320 |
| Cow position: | chr12:18944121-18943800 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 5-321 |
| Cow position: | chr12:16359409-16359721 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 5-322 |
| Cow position: | chr12:24755493-24755177 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 5-322 |
| Cow position: | chr12:36118503-36118822 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 61 |
| Conread position: | 5-323 |
| Cow position: | chr12:3950805-3950498 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 5-323 |
| Cow position: | chr12:35311143-35310825 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 5-324 |
| Cow position: | chr12:19691707-19691384 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 5-326 |
| Cow position: | chr12:18421395-18421071 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 157, 78 |
| Conread position: | 5-328 |
| Cow position: | chr12:2242358-2242035 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 157, 75 |
| Conread position: | 5-328 |
| Cow position: | chr12:7977584-7977896 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 5-331 |
| Cow position: | chr12:36501415-36501093 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 157, 61 |
| Conread position: | 6-201 |
| Cow position: | chr12:34177339-34177538 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 6-242 |
| Cow position: | chr12:1520937-1521178 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 6-242 |
| Cow position: | chr12:17719080-17719321 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 71 |
| Conread position: | 6-320 |
| Cow position: | chr12:4593627-4593950 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 134, 71 |
| Conread position: | 6-321 |
| Cow position: | chr12:17007730-17008052 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 6-322 |
| Cow position: | chr12:10227525-10227846 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 6-322 |
| Cow position: | chr12:32340576-32340896 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 156, 75 |
| Conread position: | 6-323 |
| Cow position: | chr12:19040085-19039762 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 6-323 |
| Cow position: | chr12:28188057-28187737 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 156, 74 |
| Conread position: | 6-329 |
| Cow position: | chr12:27176121-27175810 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 191, 59 |
| Conread position: | 6-329 |
| Cow position: | chr12:27192888-27193199 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 191, 59 |
| Conread position: | 7-328 |
| Cow position: | chr12:15107239-15107552 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 133, 64 |
| Conread position: | 8-295 |
| Cow position: | chr12:38678226-38678527 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 151, 69 |
| Conread position: | 8-328 |
| Cow position: | chr12:3211850-3212181 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 9-324 |
| Cow position: | chr12:40910744-40910439 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 153, 61 |
| Conread position: | 11-192 |
| Cow position: | chr12:16606241-16606059 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 156, 66 |
| Conread position: | 11-287 |
| Cow position: | chr12:9414230-9413957 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 147, 244 |
| Conread position: | 11-323 |
| Cow position: | chr12:11582943-11583246 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 11-325 |
| Cow position: | chr12:6210628-6210306 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 13-157 |
| Cow position: | chr12:42698953-42698811 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 15-171 |
| Cow position: | chr12:18550438-18550592 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 21-322 |
| Cow position: | chr12:29486660-29486963 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 21-323 |
| Cow position: | chr12:24440359-24440667 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 27-325 |
| Cow position: | chr12:20312602-20312316 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 29-321 |
| Cow position: | chr12:7108735-7109035 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 36-330 |
| Cow position: | chr12:22132407-22132124 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 42-323 |
| Cow position: | chr12:35218833-35218557 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 120, 35 |
| Conread position: | 44-237 |
| Cow position: | chr12:25605879-25605681 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 44-320 |
| Cow position: | chr12:10461576-10461849 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 44-323 |
| Cow position: | chr12:36204323-36204043 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 39 |
| Conread position: | 47-323 |
| Cow position: | chr12:27808900-27808621 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 47-330 |
| Cow position: | chr12:10847044-10846761 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 200 |
| Conread position: | 49-328 |
| Cow position: | chr12:25312802-25312518 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 113, 31 |
| Conread position: | 72-322 |
| Cow position: | chr12:30596064-30596315 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 72-330 |
| Cow position: | chr12:45814666-45814405 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 78-330 |
| Cow position: | chr12:22124623-22124866 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 166, 91 |
| Conread position: | 85-276 |
| Cow position: | chr12:3568560-3568754 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
Show alignments to all cow chromosomes.