Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-147 |
| Cow position: | chr14:37677798-37677945 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 1-173 |
| Cow position: | chr14:13810442-13810261 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 1-268 |
| Cow position: | chr14:12243909-12244179 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-309 |
| Cow position: | chr14:44253375-44253067 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 1-322 |
| Cow position: | chr14:10907204-10906871 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 1-322 |
| Cow position: | chr14:41479180-41479504 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 1-328 |
| Cow position: | chr14:7599734-7600069 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 89 |
| Conread position: | 1-328 |
| Cow position: | chr14:39821650-39821313 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 1-330 |
| Cow position: | chr14:25385407-25385739 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 87 |
| Conread position: | 4-211 |
| Cow position: | chr14:32450619-32450830 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-211 |
| Cow position: | chr14:41081200-41080989 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 4-269 |
| Cow position: | chr14:36109395-36109126 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 4-321 |
| Cow position: | chr14:193592-193907 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 4-322 |
| Cow position: | chr14:35337997-35338317 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 4-323 |
| Cow position: | chr14:20786825-20787150 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-323 |
| Cow position: | chr14:46075060-46074738 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 4-326 |
| Cow position: | chr14:23916304-23915984 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 5-153 |
| Cow position: | chr14:14317361-14317208 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 5-157 |
| Cow position: | chr14:33791686-33791535 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 5-171 |
| Cow position: | chr14:23308221-23308059 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 5-189 |
| Cow position: | chr14:23591882-23591695 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 152, 76 |
| Conread position: | 5-242 |
| Cow position: | chr14:48606243-48606000 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 5-317 |
| Cow position: | chr14:18940837-18941141 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 162, 72 |
| Conread position: | 5-317 |
| Cow position: | chr14:22982368-22982042 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 5-317 |
| Cow position: | chr14:33462629-33462319 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 172, 79 |
| Conread position: | 5-320 |
| Cow position: | chr14:12546115-12546432 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 131, 75 |
| Conread position: | 5-320 |
| Cow position: | chr14:28708501-28708185 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 5-321 |
| Cow position: | chr14:17756033-17755718 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 5-322 |
| Cow position: | chr14:7960240-7959927 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 5-322 |
| Cow position: | chr14:46224142-46223826 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 5-323 |
| Cow position: | chr14:14621706-14622019 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 5-323 |
| Cow position: | chr14:19512914-19513221 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 159, 72 |
| Conread position: | 5-323 |
| Cow position: | chr14:28988164-28987847 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 5-324 |
| Cow position: | chr14:27792008-27791681 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 5-328 |
| Cow position: | chr14:6418836-6419157 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 5-328 |
| Cow position: | chr14:7647558-7647887 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 5-330 |
| Cow position: | chr14:33538454-33538773 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 48, 76 |
| Conread position: | 6-157 |
| Cow position: | chr14:19318286-19318436 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 6-171 |
| Cow position: | chr14:34355011-34355184 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 6-172 |
| Cow position: | chr14:5521158-5521331 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 6-189 |
| Cow position: | chr14:33626932-33626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 6-229 |
| Cow position: | chr14:19887584-19887818 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 6-242 |
| Cow position: | chr14:33834565-33834326 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 173, 71 |
| Conread position: | 6-269 |
| Cow position: | chr14:17651374-17651640 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 6-320 |
| Cow position: | chr14:25885974-25885658 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 152, 74 |
| Conread position: | 6-321 |
| Cow position: | chr14:19189511-19189193 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 152, 247 |
| Conread position: | 6-321 |
| Cow position: | chr14:19350804-19350474 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 6-322 |
| Cow position: | chr14:44557371-44557678 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 149, 50 |
| Conread position: | 6-324 |
| Cow position: | chr14:16525341-16525029 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 6-324 |
| Cow position: | chr14:22583613-22583295 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 6-325 |
| Cow position: | chr14:38143661-38143959 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 238, 74 |
| Conread position: | 6-329 |
| Cow position: | chr14:31734383-31734697 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 7-235 |
| Cow position: | chr14:18199142-18199389 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 7-324 |
| Cow position: | chr14:24417357-24417038 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 71 |
| Conread position: | 7-329 |
| Cow position: | chr14:42918576-42918238 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 7-331 |
| Cow position: | chr14:9110263-9110584 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 8-322 |
| Cow position: | chr14:44741915-44742226 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 89, 69 |
| Conread position: | 8-323 |
| Cow position: | chr14:35650731-35651050 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 147, 69 |
| Conread position: | 9-315 |
| Cow position: | chr14:41324969-41325281 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 149, 68 |
| Conread position: | 11-157 |
| Cow position: | chr14:38379751-38379606 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 11-259 |
| Cow position: | chr14:41180253-41180502 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 147, 72 |
| Conread position: | 11-325 |
| Cow position: | chr14:45605565-45605244 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 11-330 |
| Cow position: | chr14:11564984-11565309 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 15-157 |
| Cow position: | chr14:7018643-7018502 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 44-323 |
| Cow position: | chr14:18448579-18448853 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 36 |
| Conread position: | 45-325 |
| Cow position: | chr14:25779529-25779244 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 112, 35 |
| Conread position: | 48-328 |
| Cow position: | chr14:26449176-26448899 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 114, 32 |
| Conread position: | 48-328 |
| Cow position: | chr14:34221485-34221205 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 48-328 |
| Cow position: | chr14:39877185-39877456 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 122, 21 |
| Conread position: | 48-330 |
| Cow position: | chr14:19222312-19222031 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 51-328 |
| Cow position: | chr14:25458750-25458474 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 33, 199 |
| Conread position: | 54-323 |
| Cow position: | chr14:6735446-6735705 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 60-328 |
| Cow position: | chr14:21285041-21284777 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 61-322 |
| Cow position: | chr14:41211901-41211644 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 62-323 |
| Cow position: | chr14:19193604-19193861 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 83-322 |
| Cow position: | chr14:40201380-40201618 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 167 |
| Conread position: | 84-331 |
| Cow position: | chr14:37640628-37640382 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 171 |
| Conread position: | 94-323 |
| Cow position: | chr14:33828530-33828316 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 108, 154 |
| Conread position: | 118-321 |
| Cow position: | chr14:48427438-48427230 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 166-328 |
| Cow position: | chr14:28605485-28605324 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 81 |
| Conread position: | 166-333 |
| Cow position: | chr14:29605928-29606089 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 131, 77 |
Show alignments to all cow chromosomes.