Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-157
Cow position: chr16:16057594-16057432 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 89

Conread position: 1-157
Cow position: chr16:19152243-19152404 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 5, 83

Conread position: 1-165
Cow position: chr16:8367589-8367426 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 5, 21

Conread position: 1-211
Cow position: chr16:18949174-18949401 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 5, 90

Conread position: 1-233
Cow position: chr16:49253173-49252939 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 5, 77

Conread position: 1-322
Cow position: chr16:51400182-51399859 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 235
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 11, 76

Conread position: 1-325
Cow position: chr16:36930752-36930431 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 5, 86

Conread position: 1-328
Cow position: chr16:23066232-23066559 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 86

Conread position: 1-328
Cow position: chr16:43851265-43850940 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 86

Conread position: 1-331
Cow position: chr16:42218129-42217790 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 5, 80

Conread position: 1-334
Cow position: chr16:29205892-29205560 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 5, 81

Conread position: 2-242
Cow position: chr16:50516340-50516086 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 36, 76

Conread position: 4-146
Cow position: chr16:25174334-25174480 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 79

Conread position: 4-272
Cow position: chr16:24427071-24427347 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 158, 76

Conread position: 4-322
Cow position: chr16:17143373-17143695 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 158, 73

Conread position: 4-323
Cow position: chr16:8026274-8025959 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 91, 76

Conread position: 4-323
Cow position: chr16:8813005-8812674 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 158, 76

Conread position: 4-323
Cow position: chr16:14351359-14351038 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 158, 77

Conread position: 4-323
Cow position: chr16:20967495-20967173 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 153, 73

Conread position: 4-323
Cow position: chr16:29051232-29051560 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 150, 73

Conread position: 5-157
Cow position: chr16:11619300-11619450 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 50, 0

Conread position: 5-173
Cow position: chr16:22849676-22849846 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 66

Conread position: 5-197
Cow position: chr16:17945156-17945350 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 152, 78

Conread position: 5-236
Cow position: chr16:7504676-7504904 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 154, 76

Conread position: 5-237
Cow position: chr16:49449777-49449544 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 153, 72

Conread position: 5-242
Cow position: chr16:22320157-22319915 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 152, 75

Conread position: 5-268
Cow position: chr16:45654470-45654191 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 78

Conread position: 5-272
Cow position: chr16:42073391-42073117 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 153, 72

Conread position: 5-319
Cow position: chr16:16177389-16177701 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 233
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 32

Conread position: 5-319
Cow position: chr16:48087300-48086990 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 153, 70

Conread position: 5-321
Cow position: chr16:4972456-4972136 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 72

Conread position: 5-321
Cow position: chr16:42079269-42078955 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 153, 72

Conread position: 5-322
Cow position: chr16:17665210-17665522 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 48, 18

Conread position: 5-322
Cow position: chr16:19757218-19756909 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 41, 75

Conread position: 5-322
Cow position: chr16:41590357-41590661 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 72, 0

Conread position: 5-322
Cow position: chr16:42970362-42970042 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 72

Conread position: 5-323
Cow position: chr16:11100225-11099910 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 153, 62

Conread position: 5-323
Cow position: chr16:22130100-22129785 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 157, 75

Conread position: 5-323
Cow position: chr16:39343966-39344282 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 157, 72

Conread position: 5-324
Cow position: chr16:31122685-31122357 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 149, 72

Conread position: 5-324
Cow position: chr16:33704375-33704695 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 128, 72

Conread position: 5-324
Cow position: chr16:51599033-51598717 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 75

Conread position: 5-325
Cow position: chr16:43275586-43275911 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 239
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 41, 83

Conread position: 5-325
Cow position: chr16:53267288-53267612 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 47, 80

Conread position: 5-328
Cow position: chr16:39474568-39474245 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 41, 74

Conread position: 6-146
Cow position: chr16:19670994-19670850 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 62

Conread position: 6-157
Cow position: chr16:237816-237966 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 6-157
Cow position: chr16:46552377-46552527 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 6-173
Cow position: chr16:37453231-37453067 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 158, 55

Conread position: 6-178
Cow position: chr16:45562770-45562944 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 151, 71

Conread position: 6-205
Cow position: chr16:19340280-19340483 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 158, 74

Conread position: 6-211
Cow position: chr16:41623381-41623590 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 156, 71

Conread position: 6-242
Cow position: chr16:32970500-32970255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 74

Conread position: 6-288
Cow position: chr16:50453203-50453471 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 195
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 6-322
Cow position: chr16:6264151-6263831 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 50

Conread position: 6-322
Cow position: chr16:35285165-35284845 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 156, 71

Conread position: 6-323
Cow position: chr16:7010640-7010956 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 152, 71

Conread position: 6-323
Cow position: chr16:37924592-37924278 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 64, 72

Conread position: 6-324
Cow position: chr16:15824864-15824556 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 152, 65

Conread position: 6-324
Cow position: chr16:41753011-41752684 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 171, 71

Conread position: 6-326
Cow position: chr16:7136777-7136464 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 193, 71

Conread position: 7-317
Cow position: chr16:16605872-16606188 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 66

Conread position: 7-322
Cow position: chr16:20234527-20234207 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 148, 70

Conread position: 7-322
Cow position: chr16:34210843-34210526 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 7-324
Cow position: chr16:48398672-48398363 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 151, 76

Conread position: 7-330
Cow position: chr16:40561797-40562125 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 151, 70

Conread position: 8-222
Cow position: chr16:54083279-54083496 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 147, 67

Conread position: 8-242
Cow position: chr16:22124596-22124356 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 151, 69

Conread position: 8-328
Cow position: chr16:3918099-3918423 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 9-322
Cow position: chr16:30289888-30290203 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 9-323
Cow position: chr16:22805000-22804704 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 210
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 11-129
Cow position: chr16:27161173-27161056 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 11-231
Cow position: chr16:19643470-19643695 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 150, 66

Conread position: 11-236
Cow position: chr16:11055069-11055305 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 34, 77

Conread position: 11-290
Cow position: chr16:8449083-8448800 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 151, 35

Conread position: 11-292
Cow position: chr16:20559706-20559992 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 75

Conread position: 12-236
Cow position: chr16:44676467-44676692 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 165, 65

Conread position: 13-322
Cow position: chr16:14441463-14441776 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 70

Conread position: 13-325
Cow position: chr16:10858050-10857734 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 34, 68

Conread position: 15-322
Cow position: chr16:7083154-7082849 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 18, 25

Conread position: 23-324
Cow position: chr16:49169792-49169497 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 132, 57

Conread position: 26-269
Cow position: chr16:9497679-9497434 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 132, 51

Conread position: 28-323
Cow position: chr16:49230177-49229884 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 152, 9

Conread position: 41-324
Cow position: chr16:51578806-51578528 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 121, 42

Conread position: 44-325
Cow position: chr16:23737793-23738069 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 36

Conread position: 44-328
Cow position: chr16:53547976-53547694 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 37

Conread position: 45-244
Cow position: chr16:23035711-23035513 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 115

Conread position: 48-328
Cow position: chr16:4762743-4763024 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 112, 8

Conread position: 48-330
Cow position: chr16:7665240-7665529 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 125, 7

Conread position: 54-323
Cow position: chr16:7541909-7542170 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 104, 26

Conread position: 54-333
Cow position: chr16:56832128-56831840 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 42, 29

Conread position: 62-328
Cow position: chr16:37442504-37442234 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 197

Conread position: 63-321
Cow position: chr16:5293285-5293549 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 91, 203

Conread position: 63-328
Cow position: chr16:41037314-41037579 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 109, 20

Conread position: 77-323
Cow position: chr16:9790985-9790744 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 126, 38

Conread position: 80-306
Cow position: chr16:47852972-47852747 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 90, 170

Conread position: 82-284
Cow position: chr16:22340734-22340931 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 80, 126

Conread position: 84-320
Cow position: chr16:48096115-48095877 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 62

Conread position: 84-324
Cow position: chr16:39514437-39514187 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 78, 167

Show alignments to all cow chromosomes.