Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-171
Cow position: chr17:25340930-25340751 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 83

Conread position: 1-317
Cow position: chr17:23517561-23517246 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 61

Conread position: 1-319
Cow position: chr17:12289814-12289491 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 5, 77

Conread position: 1-323
Cow position: chr17:35021079-35020768 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 83

Conread position: 1-325
Cow position: chr17:9753398-9753719 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 5, 83

Conread position: 1-328
Cow position: chr17:18494921-18494583 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 5, 81

Conread position: 2-157
Cow position: chr17:6848495-6848655 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 27, 37

Conread position: 4-173
Cow position: chr17:2201957-2202128 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 52

Conread position: 4-173
Cow position: chr17:23884157-23883990 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 160, 68

Conread position: 4-321
Cow position: chr17:241947-242280 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 40, 85

Conread position: 4-321
Cow position: chr17:27978764-27979100 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 75

Conread position: 4-322
Cow position: chr17:34390952-34390633 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 217
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 158, 73

Conread position: 4-323
Cow position: chr17:18312116-18312438 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 76

Conread position: 5-131
Cow position: chr17:26803206-26803081 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 5-157
Cow position: chr17:24618436-24618596 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 5-157
Cow position: chr17:32280266-32280115 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 5-171
Cow position: chr17:29079985-29080152 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 73

Conread position: 5-173
Cow position: chr17:6423337-6423505 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 79

Conread position: 5-173
Cow position: chr17:25140862-25141032 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 73

Conread position: 5-206
Cow position: chr17:43178177-43177977 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 157, 72

Conread position: 5-222
Cow position: chr17:35223159-35223391 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 114, 72

Conread position: 5-236
Cow position: chr17:3386907-3387140 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 75

Conread position: 5-239
Cow position: chr17:10649459-10649698 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 174
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 139, 72

Conread position: 5-242
Cow position: chr17:30539639-30539395 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 159, 75

Conread position: 5-250
Cow position: chr17:5730537-5730784 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 152, 48

Conread position: 5-311
Cow position: chr17:18266672-18266990 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 135, 72

Conread position: 5-319
Cow position: chr17:1493546-1493231 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 152, 70

Conread position: 5-320
Cow position: chr17:4601932-4601619 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 153, 75

Conread position: 5-320
Cow position: chr17:11102179-11101875 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 41, 81

Conread position: 5-320
Cow position: chr17:23337404-23337091 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 157, 72

Conread position: 5-322
Cow position: chr17:23063325-23063639 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 171, 75

Conread position: 5-322
Cow position: chr17:34317107-34316778 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 154, 72

Conread position: 5-323
Cow position: chr17:20848146-20848450 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 172, 72

Conread position: 5-323
Cow position: chr17:20993432-20993112 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 57, 74

Conread position: 5-323
Cow position: chr17:28539650-28539957 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 78

Conread position: 5-324
Cow position: chr17:4213367-4213691 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 157, 71

Conread position: 5-324
Cow position: chr17:26764623-26764946 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 82

Conread position: 5-325
Cow position: chr17:29292764-29292436 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 39, 82

Conread position: 5-328
Cow position: chr17:5042077-5041744 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 40, 21

Conread position: 5-328
Cow position: chr17:27698089-27697768 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 40, 82

Conread position: 5-331
Cow position: chr17:15188462-15188141 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 153, 62

Conread position: 5-333
Cow position: chr17:21874707-21874375 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 51, 78

Conread position: 5-357
Cow position: chr17:40405917-40406270 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 72

Conread position: 6-131
Cow position: chr17:30712651-30712775 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 31

Conread position: 6-157
Cow position: chr17:32472219-32472069 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 76

Conread position: 6-232
Cow position: chr17:4107405-4107179 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 152, 71

Conread position: 6-232
Cow position: chr17:4123141-4122914 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 152, 71

Conread position: 6-237
Cow position: chr17:3388471-3388707 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 74, 100

Conread position: 6-242
Cow position: chr17:32989104-32989344 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 152, 71

Conread position: 6-242
Cow position: chr17:42258517-42258759 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 162, 71

Conread position: 6-289
Cow position: chr17:3684046-3683764 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 166, 71

Conread position: 6-289
Cow position: chr17:11913089-11912808 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 152, 71

Conread position: 6-321
Cow position: chr17:3781646-3781971 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 157, 260

Conread position: 6-321
Cow position: chr17:27667582-27667262 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 152, 42

Conread position: 6-321
Cow position: chr17:32994002-32993692 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 71

Conread position: 6-322
Cow position: chr17:21660104-21659789 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr17:27986225-27985905 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr17:36413373-36413053 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr17:42026147-42026467 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 156, 71

Conread position: 6-323
Cow position: chr17:5896301-5895982 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 71

Conread position: 6-328
Cow position: chr17:13237116-13236791 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 49, 83

Conread position: 6-329
Cow position: chr17:35232402-35232079 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 39, 77

Conread position: 6-330
Cow position: chr17:11056765-11056437 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 65, 31

Conread position: 6-331
Cow position: chr17:2270374-2270692 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 39, 79

Conread position: 7-153
Cow position: chr17:24787451-24787306 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 7-289
Cow position: chr17:21807197-21806906 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 71

Conread position: 7-324
Cow position: chr17:13144070-13143761 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 73

Conread position: 7-324
Cow position: chr17:20269224-20269531 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 151, 76

Conread position: 7-328
Cow position: chr17:18884713-18884410 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 291, 70

Conread position: 7-328
Cow position: chr17:21363024-21363340 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 234
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 75, 30

Conread position: 8-320
Cow position: chr17:3154156-3153843 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 164, 69

Conread position: 8-322
Cow position: chr17:41400356-41400044 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 29

Conread position: 8-323
Cow position: chr17:29276845-29277160 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 154, 72

Conread position: 8-325
Cow position: chr17:24983730-24983419 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 195, 68

Conread position: 11-317
Cow position: chr17:22057558-22057251 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 46, 70

Conread position: 11-319
Cow position: chr17:26230555-26230867 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 153, 69

Conread position: 11-323
Cow position: chr17:20800432-20800744 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 46

Conread position: 11-324
Cow position: chr17:6082163-6082463 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 138, 72

Conread position: 12-335
Cow position: chr17:22773714-22773399 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 146, 65

Conread position: 17-170
Cow position: chr17:11360610-11360760 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 18-328
Cow position: chr17:26084653-26084967 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 27, 69

Conread position: 24-156
Cow position: chr17:4729953-4729822 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 44-328
Cow position: chr17:11375045-11374758 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 190

Conread position: 47-325
Cow position: chr17:9748421-9748694 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 115, 198

Conread position: 47-326
Cow position: chr17:9853638-9853921 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 117, 33

Conread position: 48-310
Cow position: chr17:2006356-2006617 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 107, 138

Conread position: 48-324
Cow position: chr17:18592090-18592373 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 50, 32

Conread position: 52-330
Cow position: chr17:16895642-16895362 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 199

Conread position: 53-328
Cow position: chr17:10271159-10271427 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 105, 27

Conread position: 54-299
Cow position: chr17:2274935-2275177 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 110, 16

Conread position: 56-240
Cow position: chr17:29081494-29081667 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 22

Conread position: 64-321
Cow position: chr17:30718747-30718493 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 113, 23

Conread position: 72-328
Cow position: chr17:11304711-11304969 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 5

Conread position: 85-336
Cow position: chr17:36746623-36746384 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 118, 81

Conread position: 98-321
Cow position: chr17:24973652-24973878 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 64, 158

Conread position: 111-328
Cow position: chr17:10634343-10634124 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 140

Conread position: 130-328
Cow position: chr17:13672336-13672137 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 77, 36

Conread position: 166-328
Cow position: chr17:36817717-36817874 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 37, 80

Conread position: 175-322
Cow position: chr17:27504910-27505053 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 69

Conread position: 179-325
Cow position: chr17:1328182-1328037 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 119, 65

Conread position: 179-325
Cow position: chr17:11655214-11655355 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 60

Conread position: 182-328
Cow position: chr17:8279916-8279776 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 80, 23

Show alignments to all cow chromosomes.