Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-157
Cow position: chr18:37339359-37339194 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 72

Conread position: 1-173
Cow position: chr18:36649254-36649434 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 5, 83

Conread position: 1-210
Cow position: chr18:45979236-45979451 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 77

Conread position: 1-243
Cow position: chr18:23659027-23658779 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 5, 77

Conread position: 1-286
Cow position: chr18:9089238-9089525 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 5, 77

Conread position: 1-319
Cow position: chr18:28767899-28768210 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 5, 77

Conread position: 1-322
Cow position: chr18:1800798-1800484 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 106

Conread position: 1-323
Cow position: chr18:38090053-38089709 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 82

Conread position: 1-324
Cow position: chr18:4540340-4540023 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 5, 80

Conread position: 1-324
Cow position: chr18:55782894-55782562 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 5, 80

Conread position: 1-328
Cow position: chr18:52595928-52596250 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 77

Conread position: 1-331
Cow position: chr18:32908429-32908758 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 2-261
Cow position: chr18:51679339-51679073 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 156, 78

Conread position: 2-322
Cow position: chr18:10574587-10574906 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 54

Conread position: 2-324
Cow position: chr18:15172579-15172888 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 172, 70

Conread position: 2-333
Cow position: chr18:24672134-24671818 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 84

Conread position: 4-323
Cow position: chr18:24021927-24022227 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 170, 76

Conread position: 4-323
Cow position: chr18:25924259-25924582 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 158, 74

Conread position: 4-324
Cow position: chr18:8967540-8967856 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 173, 73

Conread position: 4-324
Cow position: chr18:55119410-55119737 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 165, 79

Conread position: 4-324
Cow position: chr18:56168381-56168063 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 72

Conread position: 5-157
Cow position: chr18:249344-249188 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 85

Conread position: 5-166
Cow position: chr18:36232994-36232834 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 5-172
Cow position: chr18:25206760-25206592 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 153, 57

Conread position: 5-173
Cow position: chr18:268512-268345 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 0

Conread position: 5-192
Cow position: chr18:10890787-10890977 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 145, 72

Conread position: 5-200
Cow position: chr18:6829527-6829326 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 84, 72

Conread position: 5-211
Cow position: chr18:21767713-21767502 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 76

Conread position: 5-225
Cow position: chr18:9557491-9557271 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 159, 79

Conread position: 5-234
Cow position: chr18:13877198-13876958 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 78

Conread position: 5-235
Cow position: chr18:40261476-40261251 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 40, 84

Conread position: 5-240
Cow position: chr18:4496643-4496407 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 162, 75

Conread position: 5-242
Cow position: chr18:12585603-12585362 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 75

Conread position: 5-242
Cow position: chr18:19193808-19193571 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 72

Conread position: 5-272
Cow position: chr18:32283412-32283681 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 160
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 157, 72

Conread position: 5-295
Cow position: chr18:16378507-16378804 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 150, 274

Conread position: 5-320
Cow position: chr18:13293046-13293362 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 153, 73

Conread position: 5-320
Cow position: chr18:28101163-28101483 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 78

Conread position: 5-322
Cow position: chr18:22396543-22396222 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 38, 52

Conread position: 5-322
Cow position: chr18:43284214-43283904 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 295, 70

Conread position: 5-323
Cow position: chr18:13172989-13172663 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 41, 76

Conread position: 5-323
Cow position: chr18:25626561-25626883 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 179, 75

Conread position: 5-323
Cow position: chr18:36224318-36224627 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 159, 75

Conread position: 5-323
Cow position: chr18:51756636-51756948 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 28, 52

Conread position: 5-325
Cow position: chr18:2270966-2270643 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 71

Conread position: 5-325
Cow position: chr18:7964768-7965091 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 159, 72

Conread position: 5-328
Cow position: chr18:29768445-29768773 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 40, 81

Conread position: 5-328
Cow position: chr18:52635544-52635225 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 72

Conread position: 5-329
Cow position: chr18:28539850-28539527 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 112, 72

Conread position: 5-329
Cow position: chr18:32284931-32285253 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 157, 72

Conread position: 5-329
Cow position: chr18:32301076-32301398 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 157, 72

Conread position: 5-330
Cow position: chr18:55692348-55692679 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 232
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 169

Conread position: 5-331
Cow position: chr18:1859686-1859357 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 155, 261

Conread position: 5-331
Cow position: chr18:30186381-30186051 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 253

Conread position: 5-335
Cow position: chr18:3179957-3180285 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 233
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 150, 72

Conread position: 5-335
Cow position: chr18:37691059-37690743 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 198, 56

Conread position: 6-173
Cow position: chr18:19462165-19462334 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 156, 71

Conread position: 6-178
Cow position: chr18:1954986-1954812 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 71

Conread position: 6-234
Cow position: chr18:50789605-50789833 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 76

Conread position: 6-237
Cow position: chr18:15859139-15859381 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 77

Conread position: 6-320
Cow position: chr18:9974787-9974472 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 152, 118

Conread position: 6-322
Cow position: chr18:11251497-11251177 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr18:51579900-51579580 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr18:51601782-51601462 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr18:55555135-55555451 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 156, 71

Conread position: 6-324
Cow position: chr18:7649530-7649853 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 77

Conread position: 6-324
Cow position: chr18:37024018-37023697 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 156, 74

Conread position: 6-324
Cow position: chr18:44262153-44262481 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 69, 255

Conread position: 7-269
Cow position: chr18:55589935-55589667 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 150, 70

Conread position: 7-325
Cow position: chr18:19159423-19159114 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 155, 32

Conread position: 7-328
Cow position: chr18:40203256-40202945 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 77

Conread position: 8-173
Cow position: chr18:38984916-38985080 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 0

Conread position: 8-232
Cow position: chr18:24267302-24267073 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 150, 69

Conread position: 8-286
Cow position: chr18:4556846-4556564 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 150, 251

Conread position: 8-323
Cow position: chr18:32280832-32281150 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 41, 89

Conread position: 8-324
Cow position: chr18:35075931-35076241 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 23, 30

Conread position: 8-325
Cow position: chr18:28658368-28658052 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 166, 69

Conread position: 8-328
Cow position: chr18:32860183-32860504 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 37, 75

Conread position: 11-261
Cow position: chr18:6103559-6103320 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 233, 69

Conread position: 11-317
Cow position: chr18:16418150-16417846 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 66

Conread position: 11-323
Cow position: chr18:10084068-10084391 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 19, 27

Conread position: 11-331
Cow position: chr18:16227110-16227429 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 26

Conread position: 15-330
Cow position: chr18:27388102-27388413 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 149, 51

Conread position: 18-242
Cow position: chr18:11311596-11311370 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 141, 62

Conread position: 20-289
Cow position: chr18:1023342-1023610 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 154, 63

Conread position: 39-243
Cow position: chr18:35766392-35766595 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 164, 41

Conread position: 43-330
Cow position: chr18:36445003-36445299 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 39

Conread position: 44-323
Cow position: chr18:16134732-16134452 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 118, 86

Conread position: 44-328
Cow position: chr18:55697439-55697154 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 33

Conread position: 83-328
Cow position: chr18:15324157-15323913 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 78, 173

Conread position: 83-329
Cow position: chr18:7359356-7359600 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 84, 31

Conread position: 98-322
Cow position: chr18:49660411-49660188 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 155

Conread position: 113-328
Cow position: chr18:35797265-35797484 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 47, 140

Conread position: 169-328
Cow position: chr18:50700370-50700530 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 77

Conread position: 170-330
Cow position: chr18:21067646-21067801 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 83

Show alignments to all cow chromosomes.