Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-164 |
| Cow position: | chr19:43733290-43733457 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 1-288 |
| Cow position: | chr19:48218482-48218182 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 85 |
| Conread position: | 1-312 |
| Cow position: | chr19:25955286-25954973 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 1-324 |
| Cow position: | chr19:23222197-23222513 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 77 |
| Conread position: | 1-326 |
| Cow position: | chr19:29627819-29627500 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 1-328 |
| Cow position: | chr19:33280925-33281246 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 1-328 |
| Cow position: | chr19:35782566-35782248 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 1-330 |
| Cow position: | chr19:38392352-38392685 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 2-157 |
| Cow position: | chr19:5434499-5434345 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 4-322 |
| Cow position: | chr19:54006473-54006793 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 53 |
| Conread position: | 4-323 |
| Cow position: | chr19:4460855-4460535 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 8, 58 |
| Conread position: | 4-323 |
| Cow position: | chr19:39395603-39395920 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-323 |
| Cow position: | chr19:42609270-42609583 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 136, 76 |
| Conread position: | 4-326 |
| Cow position: | chr19:30518611-30518937 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 4-326 |
| Cow position: | chr19:40439477-40439802 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 224 |
| Conread position: | 4-331 |
| Cow position: | chr19:14473220-14472892 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 154, 63 |
| Conread position: | 5-176 |
| Cow position: | chr19:29366616-29366786 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 5-176 |
| Cow position: | chr19:29624124-29624294 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 5-188 |
| Cow position: | chr19:10212940-10213127 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 5-242 |
| Cow position: | chr19:42777453-42777700 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 5-276 |
| Cow position: | chr19:34287369-34287640 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 117, 72 |
| Conread position: | 5-321 |
| Cow position: | chr19:44144351-44144038 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 5-322 |
| Cow position: | chr19:1355163-1355478 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 5-322 |
| Cow position: | chr19:33932585-33932273 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 5-323 |
| Cow position: | chr19:32457201-32457519 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 159, 75 |
| Conread position: | 5-323 |
| Cow position: | chr19:35311079-35310769 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 167, 72 |
| Conread position: | 5-324 |
| Cow position: | chr19:7612188-7612498 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 162, 76 |
| Conread position: | 5-324 |
| Cow position: | chr19:39577011-39576693 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 5-324 |
| Cow position: | chr19:39697631-39697948 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 5-324 |
| Cow position: | chr19:42664263-42663942 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 78 |
| Conread position: | 5-330 |
| Cow position: | chr19:38842986-38842672 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 159, 50 |
| Conread position: | 5-369 |
| Cow position: | chr19:6892219-6891862 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 6-153 |
| Cow position: | chr19:48698169-48698316 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 6-189 |
| Cow position: | chr19:15766667-15766847 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 152, 88 |
| Conread position: | 6-211 |
| Cow position: | chr19:17884059-17884265 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 152, 55 |
| Conread position: | 6-286 |
| Cow position: | chr19:13755446-13755727 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 246 |
| Conread position: | 6-308 |
| Cow position: | chr19:46822004-46822297 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 161, 46 |
| Conread position: | 6-320 |
| Cow position: | chr19:5656550-5656232 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 41 |
| Conread position: | 6-321 |
| Cow position: | chr19:47728010-47727698 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 6-322 |
| Cow position: | chr19:1581014-1580708 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 6-322 |
| Cow position: | chr19:20001769-20001449 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 156, 71 |
| Conread position: | 6-322 |
| Cow position: | chr19:33118833-33118513 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 6-322 |
| Cow position: | chr19:42156466-42156784 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 156, 71 |
| Conread position: | 6-324 |
| Cow position: | chr19:15068434-15068125 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 6-324 |
| Cow position: | chr19:24956869-24956565 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 158, 71 |
| Conread position: | 6-324 |
| Cow position: | chr19:39056804-39057121 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 74 |
| Conread position: | 6-324 |
| Cow position: | chr19:42725913-42726238 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 156, 74 |
| Conread position: | 6-324 |
| Cow position: | chr19:43431759-43431445 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 174, 71 |
| Conread position: | 7-237 |
| Cow position: | chr19:49358822-49358590 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 7-320 |
| Cow position: | chr19:21198686-21199010 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 151, 248 |
| Conread position: | 7-324 |
| Cow position: | chr19:15863496-15863164 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 265 |
| Conread position: | 7-330 |
| Cow position: | chr19:742613-742289 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 8-237 |
| Cow position: | chr19:39623227-39622991 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 8-244 |
| Cow position: | chr19:36189775-36190011 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 156, 73 |
| Conread position: | 8-308 |
| Cow position: | chr19:52214654-52214949 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 8-321 |
| Cow position: | chr19:37647279-37646963 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 10-325 |
| Cow position: | chr19:24688846-24689163 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 34, 76 |
| Conread position: | 11-151 |
| Cow position: | chr19:47671284-47671422 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 11-163 |
| Cow position: | chr19:47557701-47557852 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 11-167 |
| Cow position: | chr19:11376870-11376715 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 11-192 |
| Cow position: | chr19:55247011-55247192 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 11-243 |
| Cow position: | chr19:15137025-15137258 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 11-324 |
| Cow position: | chr19:24061862-24062169 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 147, 63 |
| Conread position: | 14-323 |
| Cow position: | chr19:27348697-27348394 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 21-331 |
| Cow position: | chr19:19804958-19804646 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 137, 55 |
| Conread position: | 44-234 |
| Cow position: | chr19:20316274-20316082 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 44-329 |
| Cow position: | chr19:25637894-25637614 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 39 |
| Conread position: | 47-323 |
| Cow position: | chr19:14929073-14928780 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 115, 210 |
| Conread position: | 48-328 |
| Cow position: | chr19:36977314-36977033 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 62-323 |
| Cow position: | chr19:39583841-39583584 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 62-330 |
| Cow position: | chr19:18788486-18788221 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 77-321 |
| Cow position: | chr19:25048971-25048732 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 94, 158 |
| Conread position: | 92-331 |
| Cow position: | chr19:52278813-52278578 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 168 |
| Conread position: | 98-330 |
| Cow position: | chr19:6515911-6516142 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 111-358 |
| Cow position: | chr19:19490273-19490035 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 120-323 |
| Cow position: | chr19:36461856-36461651 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 124-328 |
| Cow position: | chr19:26689824-26690020 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 166-328 |
| Cow position: | chr19:5648928-5648771 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 169-321 |
| Cow position: | chr19:2208049-2207900 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 80 |
Show alignments to all cow chromosomes.