Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-176 |
| Cow position: | chr20:7803604-7803426 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 1-242 |
| Cow position: | chr20:9340400-9340643 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-322 |
| Cow position: | chr20:27565622-27565952 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 89 |
| Conread position: | 1-325 |
| Cow position: | chr20:581314-580989 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 1-325 |
| Cow position: | chr20:13955647-13955971 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 1-328 |
| Cow position: | chr20:13821981-13821647 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 1-329 |
| Cow position: | chr20:8429358-8429681 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-329 |
| Cow position: | chr20:26076689-26077020 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 86 |
| Conread position: | 2-317 |
| Cow position: | chr20:13267819-13267505 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 155, 75 |
| Conread position: | 4-246 |
| Cow position: | chr20:28440881-28441122 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 192, 159 |
| Conread position: | 4-322 |
| Cow position: | chr20:18222967-18222647 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 4-323 |
| Cow position: | chr20:12567476-12567159 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 4-328 |
| Cow position: | chr20:13817456-13817781 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 79 |
| Conread position: | 4-329 |
| Cow position: | chr20:1745139-1745468 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 4-330 |
| Cow position: | chr20:19410754-19410429 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 4-334 |
| Cow position: | chr20:27877334-27877670 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 158, 73 |
| Conread position: | 5-131 |
| Cow position: | chr20:10199978-10200104 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 72 |
| Conread position: | 5-154 |
| Cow position: | chr20:4911702-4911849 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-157 |
| Cow position: | chr20:24209588-24209745 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 5-219 |
| Cow position: | chr20:7399081-7398862 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 72 |
| Conread position: | 5-242 |
| Cow position: | chr20:31845969-31845727 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 5-263 |
| Cow position: | chr20:38935596-38935336 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 72 |
| Conread position: | 5-310 |
| Cow position: | chr20:34001777-34001482 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 148, 75 |
| Conread position: | 5-319 |
| Cow position: | chr20:23679541-23679222 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 5-321 |
| Cow position: | chr20:12996401-12996081 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 5-321 |
| Cow position: | chr20:34202261-34202577 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 5-322 |
| Cow position: | chr20:12012939-12013255 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 5-322 |
| Cow position: | chr20:12442084-12441759 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 5-322 |
| Cow position: | chr20:27339675-27339994 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 72 |
| Conread position: | 5-322 |
| Cow position: | chr20:35113143-35113464 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 5-323 |
| Cow position: | chr20:17734164-17733846 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 5-323 |
| Cow position: | chr20:31261351-31261654 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 159, 73 |
| Conread position: | 5-323 |
| Cow position: | chr20:32548581-32548891 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 157, 50 |
| Conread position: | 5-324 |
| Cow position: | chr20:21019178-21019495 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 106, 64 |
| Conread position: | 5-325 |
| Cow position: | chr20:9536749-9537066 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 75 |
| Conread position: | 5-330 |
| Cow position: | chr20:23871208-23870875 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 5-331 |
| Cow position: | chr20:13269239-13269565 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 76, 113 |
| Conread position: | 5-357 |
| Cow position: | chr20:29586618-29586276 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 152, 67 |
| Conread position: | 6-146 |
| Cow position: | chr20:28067774-28067638 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 6-182 |
| Cow position: | chr20:9509316-9509138 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 6-317 |
| Cow position: | chr20:32866731-32866418 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 31 |
| Conread position: | 6-320 |
| Cow position: | chr20:40176866-40177173 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 6-321 |
| Cow position: | chr20:10235465-10235784 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 6-321 |
| Cow position: | chr20:35970558-35970874 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 149, 61 |
| Conread position: | 6-324 |
| Cow position: | chr20:8577861-8578179 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 7-322 |
| Cow position: | chr20:20353300-20352988 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 152, 70 |
| Conread position: | 7-323 |
| Cow position: | chr20:16715018-16715328 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 170, 70 |
| Conread position: | 7-324 |
| Cow position: | chr20:10818610-10818292 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 7-324 |
| Cow position: | chr20:28604829-28605135 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-324 |
| Cow position: | chr20:31747009-31746697 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 150, 69 |
| Conread position: | 8-319 |
| Cow position: | chr20:9473998-9473694 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 8-320 |
| Cow position: | chr20:3501909-3502223 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 150, 69 |
| Conread position: | 8-321 |
| Cow position: | chr20:19363746-19363435 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 8-324 |
| Cow position: | chr20:14806501-14806817 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 156, 29 |
| Conread position: | 8-330 |
| Cow position: | chr20:14740473-14740160 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 165, 72 |
| Conread position: | 11-169 |
| Cow position: | chr20:12421020-12420863 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 11-198 |
| Cow position: | chr20:746578-746765 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 11-323 |
| Cow position: | chr20:3034721-3035028 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 169, 69 |
| Conread position: | 11-324 |
| Cow position: | chr20:32846971-32847287 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 147, 70 |
| Conread position: | 11-330 |
| Cow position: | chr20:7757009-7756693 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 153, 66 |
| Conread position: | 12-321 |
| Cow position: | chr20:5702367-5702677 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 143, 68 |
| Conread position: | 12-324 |
| Cow position: | chr20:28759512-28759822 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 12-328 |
| Cow position: | chr20:10689398-10689713 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 13-328 |
| Cow position: | chr20:36374318-36373995 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 14-322 |
| Cow position: | chr20:38123499-38123819 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 202 |
| Conread position: | 15-323 |
| Cow position: | chr20:4621719-4621415 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 21-157 |
| Cow position: | chr20:17582435-17582570 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 21-276 |
| Cow position: | chr20:6045773-6045513 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 21-333 |
| Cow position: | chr20:22446009-22445695 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 23-323 |
| Cow position: | chr20:33531940-33532237 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 45-330 |
| Cow position: | chr20:12334035-12334310 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 48-330 |
| Cow position: | chr20:32667645-32667931 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 32 |
| Conread position: | 55-322 |
| Cow position: | chr20:22959681-22959413 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 56-317 |
| Cow position: | chr20:33144891-33144631 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 61-328 |
| Cow position: | chr20:15577223-15576953 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 75-323 |
| Cow position: | chr20:35797285-35797538 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 77-330 |
| Cow position: | chr20:33435479-33435231 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 154, 108 |
| Conread position: | 77-333 |
| Cow position: | chr20:17251394-17251649 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 131 |
| Conread position: | 80-323 |
| Cow position: | chr20:19328088-19328328 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 81-324 |
| Cow position: | chr20:9588301-9588543 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 169 |
| Conread position: | 83-318 |
| Cow position: | chr20:21345091-21345339 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 65, 176 |
| Conread position: | 103-323 |
| Cow position: | chr20:15761238-15761016 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 135-322 |
| Cow position: | chr20:15582294-15582107 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 113 |
Show alignments to all cow chromosomes.