Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-138
Cow position: chr21:49662793-49662651 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 83

Conread position: 1-173
Cow position: chr21:297351-297522 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 80

Conread position: 1-242
Cow position: chr21:8274557-8274314 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 86

Conread position: 1-269
Cow position: chr21:27341957-27341693 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 5, 46

Conread position: 1-296
Cow position: chr21:25158521-25158816 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 5, 37

Conread position: 1-321
Cow position: chr21:27863892-27863567 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 78

Conread position: 1-323
Cow position: chr21:8420298-8420602 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 56

Conread position: 1-323
Cow position: chr21:15584775-15584468 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 198

Conread position: 1-323
Cow position: chr21:25475762-25476081 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 5, 88

Conread position: 1-323
Cow position: chr21:28617230-28617538 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 5, 80

Conread position: 1-323
Cow position: chr21:36711821-36712149 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 5, 90

Conread position: 1-324
Cow position: chr21:13897821-13898137 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 5, 77

Conread position: 1-328
Cow position: chr21:37352783-37352467 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 5, 55

Conread position: 1-328
Cow position: chr21:44331663-44331329 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 89

Conread position: 1-328
Cow position: chr21:47823644-47823319 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 238
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 5, 81

Conread position: 1-330
Cow position: chr21:29942624-29942964 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 247
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 5, 89

Conread position: 1-331
Cow position: chr21:19766482-19766814 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 5, 77

Conread position: 2-323
Cow position: chr21:40244064-40244390 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 80

Conread position: 3-325
Cow position: chr21:42464216-42463880 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 32, 80

Conread position: 4-157
Cow position: chr21:10000657-10000505 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 4-321
Cow position: chr21:30897051-30897367 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 50, 82

Conread position: 4-323
Cow position: chr21:17144780-17145103 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 158, 76

Conread position: 4-323
Cow position: chr21:27287937-27288259 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 68, 77

Conread position: 4-323
Cow position: chr21:39700444-39700121 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 155, 76

Conread position: 5-157
Cow position: chr21:18818699-18818546 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 16

Conread position: 5-185
Cow position: chr21:21076761-21076944 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 53

Conread position: 5-196
Cow position: chr21:3467901-3468102 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 97, 72

Conread position: 5-233
Cow position: chr21:2366974-2367206 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 164, 71

Conread position: 5-243
Cow position: chr21:34618014-34618264 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 76

Conread position: 5-250
Cow position: chr21:45678-45928 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 153, 0

Conread position: 5-292
Cow position: chr21:36909454-36909745 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 135, 72

Conread position: 5-319
Cow position: chr21:33420082-33419777 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 134, 35

Conread position: 5-320
Cow position: chr21:16612262-16612573 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 44

Conread position: 5-322
Cow position: chr21:12366020-12366337 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 153, 78

Conread position: 5-322
Cow position: chr21:36163329-36163013 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 51

Conread position: 5-323
Cow position: chr21:25344509-25344822 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 45, 77

Conread position: 5-323
Cow position: chr21:32535618-32535925 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 142, 38

Conread position: 5-324
Cow position: chr21:912328-912015 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 167, 72

Conread position: 5-324
Cow position: chr21:4998852-4998534 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 72

Conread position: 5-324
Cow position: chr21:18494613-18494921 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 223
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 239, 49

Conread position: 5-324
Cow position: chr21:22719141-22718827 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 28

Conread position: 5-324
Cow position: chr21:29214522-29214199 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 156, 78

Conread position: 5-324
Cow position: chr21:44219862-44220174 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 39, 78

Conread position: 5-325
Cow position: chr21:1463866-1464181 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 150, 70

Conread position: 5-325
Cow position: chr21:12616776-12617090 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 223
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 139, 19

Conread position: 5-325
Cow position: chr21:32297869-32297554 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 153, 75

Conread position: 5-328
Cow position: chr21:5153250-5153572 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 153, 72

Conread position: 5-331
Cow position: chr21:34391333-34391016 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 75

Conread position: 5-332
Cow position: chr21:10071296-10070973 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 153, 75

Conread position: 5-397
Cow position: chr21:46462824-46463216 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 259
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 157, 57

Conread position: 6-157
Cow position: chr21:8686599-8686449 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 6-173
Cow position: chr21:44761722-44761553 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 31

Conread position: 6-189
Cow position: chr21:22464423-22464611 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 125, 70

Conread position: 6-211
Cow position: chr21:3923876-3924085 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 156, 71

Conread position: 6-237
Cow position: chr21:32574358-32574603 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 179
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 39, 81

Conread position: 6-242
Cow position: chr21:27500429-27500670 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 156, 71

Conread position: 6-256
Cow position: chr21:937686-937942 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 161, 72

Conread position: 6-318
Cow position: chr21:37299098-37299415 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 151, 248

Conread position: 6-320
Cow position: chr21:25764269-25764586 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 109, 49

Conread position: 6-321
Cow position: chr21:20262700-20262384 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 152, 71

Conread position: 6-321
Cow position: chr21:32447176-32447495 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 156, 74

Conread position: 6-321
Cow position: chr21:38691829-38692135 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 134, 42

Conread position: 6-322
Cow position: chr21:2709926-2709606 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr21:22100236-22099916 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr21:25598628-25598947 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 24, 50

Conread position: 6-322
Cow position: chr21:33770641-33770961 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 156, 71

Conread position: 6-323
Cow position: chr21:8126152-8125847 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 153, 74

Conread position: 6-324
Cow position: chr21:24130720-24131032 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 152, 71

Conread position: 6-324
Cow position: chr21:30250571-30250238 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 152, 71

Conread position: 6-326
Cow position: chr21:19363816-19363509 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 38, 43

Conread position: 6-328
Cow position: chr21:27743375-27743699 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 32

Conread position: 7-139
Cow position: chr21:36995553-36995424 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 7-321
Cow position: chr21:41957548-41957227 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 75

Conread position: 7-324
Cow position: chr21:42540585-42540264 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 84, 60

Conread position: 7-324
Cow position: chr21:44671388-44671709 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 70

Conread position: 7-329
Cow position: chr21:48484805-48484495 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 35, 60

Conread position: 8-193
Cow position: chr21:32560002-32559812 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 150, 67

Conread position: 8-325
Cow position: chr21:15742467-15742146 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 81

Conread position: 11-206
Cow position: chr21:14727695-14727886 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 60

Conread position: 11-242
Cow position: chr21:2657230-2657463 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 164, 66

Conread position: 11-322
Cow position: chr21:22855861-22856168 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 151, 76

Conread position: 11-322
Cow position: chr21:31039713-31039398 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 45

Conread position: 11-323
Cow position: chr21:36973175-36972860 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 151, 66

Conread position: 11-324
Cow position: chr21:30990627-30990318 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 24

Conread position: 12-328
Cow position: chr21:4399440-4399753 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 148, 68

Conread position: 12-331
Cow position: chr21:23785656-23785988 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 37, 211

Conread position: 44-237
Cow position: chr21:15531038-15531233 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 7, 41

Conread position: 47-323
Cow position: chr21:23672425-23672703 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 115, 33

Conread position: 47-324
Cow position: chr21:643012-643280 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 115, 32

Conread position: 48-295
Cow position: chr21:45972972-45972716 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 31, 133

Conread position: 48-328
Cow position: chr21:28993951-28993666 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 37

Conread position: 48-328
Cow position: chr21:48291354-48291085 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 126, 32

Conread position: 49-324
Cow position: chr21:35899488-35899762 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 113, 34

Conread position: 62-323
Cow position: chr21:39883758-39884012 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 102, 19

Conread position: 62-324
Cow position: chr21:395568-395822 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 96, 18

Conread position: 62-331
Cow position: chr21:426482-426753 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 100, 18

Conread position: 67-260
Cow position: chr21:36762744-36762947 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 31, 10

Conread position: 93-325
Cow position: chr21:36793602-36793839 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 64, 168

Conread position: 94-324
Cow position: chr21:42023856-42024074 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 109, 73

Conread position: 102-328
Cow position: chr21:23478987-23478763 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 60, 16

Conread position: 120-323
Cow position: chr21:39403791-39403586 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 145

Conread position: 129-322
Cow position: chr21:13410067-13409869 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 128

Conread position: 166-328
Cow position: chr21:35996969-35997129 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 9, 76

Conread position: 179-328
Cow position: chr21:24714464-24714608 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 65

Show alignments to all cow chromosomes.