Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-242
Cow position: chr24:16844795-16844545 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 22

Conread position: 1-314
Cow position: chr24:28336001-28335683 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 5, 79

Conread position: 1-323
Cow position: chr24:32455968-32456293 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 5, 77

Conread position: 1-328
Cow position: chr24:7030609-7030282 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 5, 86

Conread position: 1-328
Cow position: chr24:36555288-36554964 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 5, 80

Conread position: 1-328
Cow position: chr24:39681404-39681723 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 5, 87

Conread position: 1-331
Cow position: chr24:30766408-30766748 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 89

Conread position: 2-321
Cow position: chr24:6149575-6149886 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 162, 59

Conread position: 2-329
Cow position: chr24:5849870-5849529 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 4-242
Cow position: chr24:6154376-6154611 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 198, 110

Conread position: 4-321
Cow position: chr24:17999411-17999719 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 84

Conread position: 4-321
Cow position: chr24:29191158-29191473 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 158, 73

Conread position: 4-324
Cow position: chr24:814718-814401 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 73

Conread position: 4-331
Cow position: chr24:9070891-9070564 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 154, 73

Conread position: 4-336
Cow position: chr24:17412290-17412614 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 41, 82

Conread position: 5-155
Cow position: chr24:28601186-28601037 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 5-157
Cow position: chr24:18331230-18331386 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 62

Conread position: 5-157
Cow position: chr24:24310505-24310662 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 78

Conread position: 5-157
Cow position: chr24:27889362-27889211 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 133, 72

Conread position: 5-157
Cow position: chr24:37386819-37386662 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 76

Conread position: 5-157
Cow position: chr24:37984802-37984652 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 75, 0

Conread position: 5-164
Cow position: chr24:31816099-31816255 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 5-200
Cow position: chr24:31256721-31256528 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 68

Conread position: 5-200
Cow position: chr24:31758426-31758236 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 162, 16

Conread position: 5-209
Cow position: chr24:16897300-16897087 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 72

Conread position: 5-224
Cow position: chr24:33428451-33428675 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 157, 72

Conread position: 5-237
Cow position: chr24:43506967-43506733 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 159, 61

Conread position: 5-272
Cow position: chr24:32370372-32370091 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 77

Conread position: 5-276
Cow position: chr24:6450077-6450337 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 239, 72

Conread position: 5-292
Cow position: chr24:40149523-40149231 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 195
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 157, 75

Conread position: 5-321
Cow position: chr24:202088-201773 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 153, 72

Conread position: 5-321
Cow position: chr24:15666865-15666545 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 72

Conread position: 5-321
Cow position: chr24:27844975-27844661 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 78

Conread position: 5-321
Cow position: chr24:45216570-45216247 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 143, 72

Conread position: 5-322
Cow position: chr24:6157754-6157426 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 40, 51

Conread position: 5-322
Cow position: chr24:32693250-32693568 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 75

Conread position: 5-323
Cow position: chr24:11064415-11064716 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 5-323
Cow position: chr24:23616240-23616555 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 51

Conread position: 5-323
Cow position: chr24:40056174-40055859 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 41, 75

Conread position: 5-324
Cow position: chr24:7001523-7001200 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 152, 76

Conread position: 5-324
Cow position: chr24:22193271-22193595 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 152, 70

Conread position: 5-324
Cow position: chr24:33621941-33621620 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 157, 78

Conread position: 5-327
Cow position: chr24:27148952-27149262 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 159, 75

Conread position: 5-328
Cow position: chr24:11839725-11840046 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 72

Conread position: 5-328
Cow position: chr24:20024157-20024478 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 99, 73

Conread position: 5-328
Cow position: chr24:25677572-25677905 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 78

Conread position: 6-145
Cow position: chr24:16557108-16556969 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 111

Conread position: 6-242
Cow position: chr24:26412923-26413164 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 36, 50

Conread position: 6-317
Cow position: chr24:31308972-31309272 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 56

Conread position: 6-320
Cow position: chr24:28062493-28062812 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 173, 60

Conread position: 6-320
Cow position: chr24:28689263-28689568 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 136, 57

Conread position: 6-320
Cow position: chr24:37975524-37975211 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 72

Conread position: 6-322
Cow position: chr24:40381961-40381643 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 156, 74

Conread position: 6-324
Cow position: chr24:11886710-11887025 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 151, 77

Conread position: 6-324
Cow position: chr24:17105017-17104708 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 161, 68

Conread position: 6-324
Cow position: chr24:18732567-18732259 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 197, 31

Conread position: 6-324
Cow position: chr24:27720201-27719891 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 48

Conread position: 6-324
Cow position: chr24:28303804-28303489 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 154, 74

Conread position: 6-330
Cow position: chr24:27874152-27874470 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 156, 64

Conread position: 7-153
Cow position: chr24:6676674-6676819 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 7-318
Cow position: chr24:36722278-36722583 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 151, 70

Conread position: 7-323
Cow position: chr24:29673067-29673382 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 155, 59

Conread position: 7-328
Cow position: chr24:39500738-39500411 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 38, 77

Conread position: 7-331
Cow position: chr24:34564672-34564994 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 128, 17

Conread position: 8-212
Cow position: chr24:40771667-40771871 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 172, 75

Conread position: 8-236
Cow position: chr24:33291625-33291400 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 150, 72

Conread position: 8-323
Cow position: chr24:6665929-6665616 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 87, 75

Conread position: 8-323
Cow position: chr24:30484386-30484088 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 67, 0

Conread position: 8-325
Cow position: chr24:6341714-6342039 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 232
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 98

Conread position: 8-328
Cow position: chr24:33239002-33238680 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 73

Conread position: 8-330
Cow position: chr24:29596258-29595942 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 150, 69

Conread position: 11-324
Cow position: chr24:11118838-11119149 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 71

Conread position: 11-324
Cow position: chr24:28554003-28553683 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 244

Conread position: 12-320
Cow position: chr24:31811739-31812048 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 150, 71

Conread position: 17-325
Cow position: chr24:16625941-16625634 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 145, 66

Conread position: 31-227
Cow position: chr24:29180472-29180672 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 131, 49

Conread position: 44-322
Cow position: chr24:29845677-29845409 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 136, 32

Conread position: 47-323
Cow position: chr24:35986125-35985860 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 9, 31

Conread position: 47-324
Cow position: chr24:37080792-37080529 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 219, 24

Conread position: 48-321
Cow position: chr24:28497000-28496722 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 113, 28

Conread position: 48-328
Cow position: chr24:35568776-35569052 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 32

Conread position: 48-328
Cow position: chr24:37205285-37205011 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 29

Conread position: 50-323
Cow position: chr24:42581241-42580967 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 216
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 114, 33

Conread position: 62-322
Cow position: chr24:6340620-6340875 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 102, 15

Conread position: 62-328
Cow position: chr24:42102971-42103237 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 98, 180

Conread position: 66-330
Cow position: chr24:44041400-44041143 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 14

Conread position: 86-325
Cow position: chr24:6956809-6957043 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 118, 61

Conread position: 100-319
Cow position: chr24:29027691-29027903 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 105

Conread position: 103-329
Cow position: chr24:185171-184947 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 158

Show alignments to all cow chromosomes.