Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-153 |
| Cow position: | chr25:27521575-27521426 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-156 |
| Cow position: | chr25:11928998-11928839 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 1-157 |
| Cow position: | chr25:27510698-27510541 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 1-242 |
| Cow position: | chr25:27531703-27531458 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-331 |
| Cow position: | chr25:18490638-18490962 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 60 |
| Conread position: | 2-323 |
| Cow position: | chr25:9625374-9625698 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 4-157 |
| Cow position: | chr25:22297601-22297444 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 4-284 |
| Cow position: | chr25:4860881-4860601 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 4-323 |
| Cow position: | chr25:25754429-25754111 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 75 |
| Conread position: | 4-323 |
| Cow position: | chr25:28274877-28274564 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 5-240 |
| Cow position: | chr25:18160877-18161108 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 5-242 |
| Cow position: | chr25:13122503-13122749 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 5-242 |
| Cow position: | chr25:17992574-17992332 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 5-319 |
| Cow position: | chr25:35339902-35340213 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 172, 72 |
| Conread position: | 5-322 |
| Cow position: | chr25:11056445-11056760 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 5-323 |
| Cow position: | chr25:17658182-17658498 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 5-323 |
| Cow position: | chr25:26111851-26112152 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 5-323 |
| Cow position: | chr25:26911192-26910873 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 247 |
| Conread position: | 5-324 |
| Cow position: | chr25:2135932-2136240 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 144, 40 |
| Conread position: | 5-326 |
| Cow position: | chr25:22314768-22315091 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 5-328 |
| Cow position: | chr25:38357689-38357993 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 6-237 |
| Cow position: | chr25:598901-599139 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 6-318 |
| Cow position: | chr25:38570026-38569718 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 71 |
| Conread position: | 6-321 |
| Cow position: | chr25:8120345-8120664 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 6-322 |
| Cow position: | chr25:13067414-13067094 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 6-322 |
| Cow position: | chr25:17808209-17807889 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 158, 74 |
| Conread position: | 6-322 |
| Cow position: | chr25:28272883-28273203 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 6-324 |
| Cow position: | chr25:35347473-35347794 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 149, 60 |
| Conread position: | 6-325 |
| Cow position: | chr25:20076060-20076380 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 6-330 |
| Cow position: | chr25:12204037-12204360 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 113, 74 |
| Conread position: | 7-322 |
| Cow position: | chr25:11666237-11666536 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 49 |
| Conread position: | 7-323 |
| Cow position: | chr25:5792233-5791918 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 170, 70 |
| Conread position: | 7-324 |
| Cow position: | chr25:24572640-24572955 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 8-231 |
| Cow position: | chr25:26896610-26896837 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 149, 69 |
| Conread position: | 9-322 |
| Cow position: | chr25:36779067-36779380 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 68 |
| Conread position: | 11-243 |
| Cow position: | chr25:22550024-22549803 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 138, 65 |
| Conread position: | 11-269 |
| Cow position: | chr25:17119612-17119347 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 11-319 |
| Cow position: | chr25:4488309-4488610 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 166, 65 |
| Conread position: | 11-320 |
| Cow position: | chr25:7800709-7801022 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 147, 66 |
| Conread position: | 11-321 |
| Cow position: | chr25:7216395-7216714 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 11-321 |
| Cow position: | chr25:11830322-11830017 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 12-352 |
| Cow position: | chr25:10367112-10366780 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 15-323 |
| Cow position: | chr25:5514587-5514895 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 52 |
| Conread position: | 26-173 |
| Cow position: | chr25:1762468-1762614 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 39-237 |
| Cow position: | chr25:26225436-26225236 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 41 |
| Conread position: | 44-330 |
| Cow position: | chr25:20496146-20496426 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 36 |
| Conread position: | 45-324 |
| Cow position: | chr25:24136836-24136550 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 47-330 |
| Cow position: | chr25:26087124-26087411 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 48-323 |
| Cow position: | chr25:13840506-13840228 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 54-330 |
| Cow position: | chr25:36506643-36506380 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 63-323 |
| Cow position: | chr25:1837868-1838122 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 73-325 |
| Cow position: | chr25:40957351-40957101 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 74-323 |
| Cow position: | chr25:5847160-5846918 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 209, 69 |
| Conread position: | 80-328 |
| Cow position: | chr25:12239495-12239258 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 97-335 |
| Cow position: | chr25:20625271-20625028 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 102-329 |
| Cow position: | chr25:21245943-21245716 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 158 |
| Conread position: | 124-324 |
| Cow position: | chr25:25051699-25051495 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 184-328 |
| Cow position: | chr25:24405986-24405846 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 61 |
Show alignments to all cow chromosomes.