Cow genome map

Conread name: rcsk07_o8.y1

Conread position: 1-165
Cow position: chr27:21578174-21578347 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 5, 86

Conread position: 1-172
Cow position: chr27:27527815-27527989 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 77

Conread position: 1-233
Cow position: chr27:27737537-27737776 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 5, 76

Conread position: 1-242
Cow position: chr27:26142186-26141939 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 5, 53

Conread position: 1-274
Cow position: chr27:23502853-23502575 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 5, 19

Conread position: 1-313
Cow position: chr27:23511511-23511201 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 77

Conread position: 1-322
Cow position: chr27:20866131-20866456 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 91

Conread position: 1-323
Cow position: chr27:30447579-30447241 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 84

Conread position: 1-324
Cow position: chr27:23472645-23472320 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 6, 81

Conread position: 1-328
Cow position: chr27:15319841-15319511 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 5, 47

Conread position: 1-339
Cow position: chr27:23452872-23452532 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 231
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 84

Conread position: 2-323
Cow position: chr27:732953-732641 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 289, 75

Conread position: 2-328
Cow position: chr27:26300231-26299901 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 82

Conread position: 3-324
Cow position: chr27:491291-490956 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 236
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 41, 259

Conread position: 4-195
Cow position: chr27:8262621-8262816 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 52

Conread position: 4-236
Cow position: chr27:15925723-15925486 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 131, 76

Conread position: 4-243
Cow position: chr27:1294030-1294275 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 154, 76

Conread position: 4-322
Cow position: chr27:26545536-26545852 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 158, 68

Conread position: 4-330
Cow position: chr27:12277889-12278205 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 47, 60

Conread position: 4-331
Cow position: chr27:26223873-26224212 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 68, 281

Conread position: 5-136
Cow position: chr27:15364054-15364185 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 73

Conread position: 5-138
Cow position: chr27:10275075-10275207 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 5-153
Cow position: chr27:2848308-2848155 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 82

Conread position: 5-157
Cow position: chr27:22559464-22559314 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 5-226
Cow position: chr27:1123409-1123183 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 57, 115

Conread position: 5-242
Cow position: chr27:22107868-22108114 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 72

Conread position: 5-317
Cow position: chr27:22440529-22440212 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 70

Conread position: 5-320
Cow position: chr27:13198291-13197985 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 239, 16

Conread position: 5-323
Cow position: chr27:8291626-8291933 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 164, 48

Conread position: 5-323
Cow position: chr27:8942305-8942611 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 25, 32

Conread position: 5-323
Cow position: chr27:24999349-24999669 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 153, 72

Conread position: 5-323
Cow position: chr27:29309408-29309094 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 43

Conread position: 5-324
Cow position: chr27:815752-815434 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 159, 72

Conread position: 5-324
Cow position: chr27:4673402-4673087 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 167, 72

Conread position: 5-324
Cow position: chr27:16620373-16620056 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 41

Conread position: 5-324
Cow position: chr27:25380382-25380061 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 140, 29

Conread position: 5-325
Cow position: chr27:9090408-9090736 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 25, 81

Conread position: 5-326
Cow position: chr27:13442451-13442785 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 153, 72

Conread position: 6-242
Cow position: chr27:1906455-1906214 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 156, 71

Conread position: 6-322
Cow position: chr27:13422379-13422059 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 158, 74

Conread position: 7-324
Cow position: chr27:6074300-6073989 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 157, 48

Conread position: 7-324
Cow position: chr27:14669996-14670316 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 73

Conread position: 11-157
Cow position: chr27:28036532-28036677 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 67, 0

Conread position: 11-237
Cow position: chr27:26785601-26785829 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 147, 66

Conread position: 11-324
Cow position: chr27:17397073-17397382 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 218
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 67

Conread position: 14-323
Cow position: chr27:7289730-7290038 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 7, 67

Conread position: 16-243
Cow position: chr27:29341168-29341408 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 173
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 146, 61

Conread position: 28-323
Cow position: chr27:2900169-2899881 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 9

Conread position: 36-321
Cow position: chr27:25411160-25411446 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 126, 20

Conread position: 36-322
Cow position: chr27:20634805-20634524 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 35

Conread position: 38-329
Cow position: chr27:24227439-24227730 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 126, 42

Conread position: 44-328
Cow position: chr27:4664818-4664536 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 120, 27

Conread position: 44-328
Cow position: chr27:31371945-31372227 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 114, 33

Conread position: 44-335
Cow position: chr27:26091056-26091337 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 32

Conread position: 48-323
Cow position: chr27:26427785-26428063 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 114, 7

Conread position: 49-322
Cow position: chr27:18922793-18922521 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 113, 31

Conread position: 49-324
Cow position: chr27:12246988-12246725 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 154, 35

Conread position: 49-324
Cow position: chr27:30856059-30856322 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 128, 31

Conread position: 55-328
Cow position: chr27:23070026-23070298 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 125, 25

Conread position: 95-321
Cow position: chr27:29977553-29977317 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 72, 170

Conread position: 118-328
Cow position: chr27:16580893-16580686 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 13

Conread position: 121-323
Cow position: chr27:12429684-12429472 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 137

Conread position: 140-323
Cow position: chr27:12516450-12516264 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 108

Conread position: 160-328
Cow position: chr27:26440828-26440996 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 115

Conread position: 166-321
Cow position: chr27:29019524-29019681 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 80

Conread position: 175-324
Cow position: chr27:4812664-4812812 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 74

Conread position: 182-325
Cow position: chr27:13847845-13847706 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 62

Show alignments to all cow chromosomes.