Cow genome map
| Conread name: | rcsk07_o8.y1 |
| Conread position: | 1-173 |
| Cow position: | chr28:22320865-22321037 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 1-173 |
| Cow position: | chr28:34199881-34199706 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 1-202 |
| Cow position: | chr28:28636376-28636588 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 1-242 |
| Cow position: | chr28:10607040-10606805 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 1-322 |
| Cow position: | chr28:10642452-10642126 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 1-323 |
| Cow position: | chr28:11451904-11451571 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 56 |
| Conread position: | 1-323 |
| Cow position: | chr28:25826288-25825978 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 1-328 |
| Cow position: | chr28:6354961-6355293 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 1-331 |
| Cow position: | chr28:22322834-22323169 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 2-289 |
| Cow position: | chr28:16925640-16925354 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 2-328 |
| Cow position: | chr28:28590303-28590636 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 4-171 |
| Cow position: | chr28:31842109-31841939 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 4-323 |
| Cow position: | chr28:18516316-18515989 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 5-157 |
| Cow position: | chr28:27660173-27660018 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 5-199 |
| Cow position: | chr28:7209295-7209097 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 5-228 |
| Cow position: | chr28:8716920-8716690 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 5-256 |
| Cow position: | chr28:16003641-16003897 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 5-289 |
| Cow position: | chr28:23254212-23253940 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 191, 72 |
| Conread position: | 5-317 |
| Cow position: | chr28:5792282-5792587 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 5-321 |
| Cow position: | chr28:21844531-21844850 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 5-322 |
| Cow position: | chr28:2949117-2949432 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 156, 78 |
| Conread position: | 5-322 |
| Cow position: | chr28:15272685-15272369 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 5-323 |
| Cow position: | chr28:11787131-11786820 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 157, 72 |
| Conread position: | 5-323 |
| Cow position: | chr28:16084902-16085216 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 5-323 |
| Cow position: | chr28:28340873-28341191 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 135, 57 |
| Conread position: | 5-323 |
| Cow position: | chr28:31142388-31142074 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 153, 62 |
| Conread position: | 5-327 |
| Cow position: | chr28:30994853-30995177 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 68, 198 |
| Conread position: | 5-329 |
| Cow position: | chr28:11585632-11585306 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 5-329 |
| Cow position: | chr28:25762606-25762924 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 5-330 |
| Cow position: | chr28:4282917-4282589 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 152, 75 |
| Conread position: | 5-330 |
| Cow position: | chr28:15935067-15934747 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 5-342 |
| Cow position: | chr28:16211517-16211180 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 153, 78 |
| Conread position: | 6-144 |
| Cow position: | chr28:8111164-8111301 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 6-157 |
| Cow position: | chr28:32729664-32729513 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 6-205 |
| Cow position: | chr28:6090736-6090940 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 6-225 |
| Cow position: | chr28:4139102-4138887 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 158, 71 |
| Conread position: | 6-233 |
| Cow position: | chr28:10589450-10589221 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 152, 40 |
| Conread position: | 6-264 |
| Cow position: | chr28:11527685-11527416 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 6-321 |
| Cow position: | chr28:3914286-3914602 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 6-322 |
| Cow position: | chr28:26103303-26103602 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 6-323 |
| Cow position: | chr28:21354800-21355117 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 152, 71 |
| Conread position: | 6-323 |
| Cow position: | chr28:23615978-23616300 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 135, 71 |
| Conread position: | 6-328 |
| Cow position: | chr28:30294011-30293693 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 171, 70 |
| Conread position: | 7-276 |
| Cow position: | chr28:25128406-25128131 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 151, 70 |
| Conread position: | 7-324 |
| Cow position: | chr28:3001034-3000698 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 151, 70 |
| Conread position: | 7-324 |
| Cow position: | chr28:11687457-11687135 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 168 |
| Conread position: | 7-324 |
| Cow position: | chr28:16346938-16346633 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 291, 41 |
| Conread position: | 7-325 |
| Cow position: | chr28:11356357-11356024 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 7-325 |
| Cow position: | chr28:14234562-14234866 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 143, 70 |
| Conread position: | 7-327 |
| Cow position: | chr28:757687-757366 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 8-157 |
| Cow position: | chr28:13607283-13607432 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 8-324 |
| Cow position: | chr28:7864909-7865218 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 158, 70 |
| Conread position: | 8-324 |
| Cow position: | chr28:20760345-20760026 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 11-175 |
| Cow position: | chr28:19961464-19961633 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 72 |
| Conread position: | 11-233 |
| Cow position: | chr28:3245924-3246144 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 11-322 |
| Cow position: | chr28:14150819-14151126 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 11-323 |
| Cow position: | chr28:12430187-12430500 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 11-324 |
| Cow position: | chr28:31648653-31648967 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 11-328 |
| Cow position: | chr28:2222534-2222211 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 34, 162 |
| Conread position: | 11-330 |
| Cow position: | chr28:10529884-10529586 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 186, 66 |
| Conread position: | 11-330 |
| Cow position: | chr28:18790596-18790912 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 43 |
| Conread position: | 13-323 |
| Cow position: | chr28:25563663-25563973 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 34 |
| Conread position: | 18-323 |
| Cow position: | chr28:23111524-23111831 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 47-282 |
| Cow position: | chr28:10616333-10616102 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 47-323 |
| Cow position: | chr28:16475627-16475886 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 218, 36 |
| Conread position: | 48-315 |
| Cow position: | chr28:3750929-3751202 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 29, 213 |
| Conread position: | 48-328 |
| Cow position: | chr28:15590618-15590885 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 228, 32 |
| Conread position: | 48-330 |
| Cow position: | chr28:15677512-15677793 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 62-242 |
| Cow position: | chr28:25476444-25476630 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 69, 18 |
| Conread position: | 63-322 |
| Cow position: | chr28:13725787-13726057 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 75-328 |
| Cow position: | chr28:25334665-25334922 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 84-324 |
| Cow position: | chr28:16919508-16919266 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 176 |
| Conread position: | 85-323 |
| Cow position: | chr28:14933616-14933858 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 79, 172 |
| Conread position: | 88-329 |
| Cow position: | chr28:16686691-16686929 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 90-321 |
| Cow position: | chr28:7549403-7549169 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 188 |
| Conread position: | 91-322 |
| Cow position: | chr28:7698317-7698089 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 101, 69 |
| Conread position: | 122-322 |
| Cow position: | chr28:10456827-10456632 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 124-324 |
| Cow position: | chr28:16879572-16879380 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 117 |
| Conread position: | 170-328 |
| Cow position: | chr28:20963788-20963631 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 125, 74 |
| Conread position: | 171-324 |
| Cow position: | chr28:23621293-23621441 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 75 |
Show alignments to all cow chromosomes.