Cow genome map

Conread name: rcsk08_h15.y1

Conread position: 1-323
Cow position: chr14:3156067-3156389 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 233, 220

Conread position: 1-335
Cow position: chr14:25877496-25877830 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 212
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 147, 129

Conread position: 1-339
Cow position: chr14:680392-680730 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 211
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 233, 226

Conread position: 1-339
Cow position: chr14:25860445-25860783 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 215
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 147, 129

Conread position: 1-348
Cow position: chr14:447758-448105 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 65

Conread position: 1-357
Cow position: chr14:680476-680832 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 227
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 139, 134

Conread position: 1-379
Cow position: chr14:25783345-25783723 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 249
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 136, 125

Conread position: 2-339
Cow position: chr14:680561-680898 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 66, 73

Conread position: 2-339
Cow position: chr14:680813-681150 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 213
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 228, 208

Conread position: 2-343
Cow position: chr14:680729-681070 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 217
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 201, 213

Conread position: 2-347
Cow position: chr14:447843-448189 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 222
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 78, 83

Conread position: 2-355
Cow position: chr14:3127684-3127331 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 236
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 55

Conread position: 2-359
Cow position: chr14:25877413-25877770 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 230
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 57, 64

Conread position: 2-366
Cow position: chr14:25896040-25896402 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 219
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 354, 0

Conread position: 2-375
Cow position: chr14:3100835-3100462 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 236
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 284, 292

Conread position: 2-375
Cow position: chr14:25794844-25794471 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 231
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 135, 127

Conread position: 6-343
Cow position: chr14:680649-680986 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 215
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 56

Conread position: 6-348
Cow position: chr14:3080504-3080162 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 215
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 7-331
Cow position: chr14:3127595-3127271 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 211
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 149, 115

Conread position: 7-334
Cow position: chr14:3156157-3156484 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 7-336
Cow position: chr14:3080083-3079754 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 214
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 225, 220

Conread position: 7-339
Cow position: chr14:3155500-3155832 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 133, 128

Conread position: 7-340
Cow position: chr14:447596-447931 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 216
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 198, 223

Conread position: 7-341
Cow position: chr14:25895961-25896295 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 204
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 136, 143

Conread position: 7-343
Cow position: chr14:3101245-3100912 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 213
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 44

Conread position: 7-348
Cow position: chr14:447680-448021 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 221
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 241, 246

Conread position: 7-348
Cow position: chr14:3080167-3079826 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 217
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 134, 128

Conread position: 7-348
Cow position: chr14:3080251-3079910 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 225
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 225, 220

Conread position: 7-348
Cow position: chr14:3080419-3080078 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 225
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 7-348
Cow position: chr14:3080755-3080414 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 224
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 223, 213

Conread position: 7-348
Cow position: chr14:3100996-3100657 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 216
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 228, 109

Conread position: 7-348
Cow position: chr14:3127847-3127506 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 228
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 280, 287

Conread position: 7-355
Cow position: chr14:3080671-3080323 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 212, 206

Conread position: 7-355
Cow position: chr14:3127763-3127415 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 225, 220

Conread position: 7-361
Cow position: chr14:25794671-25794316 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 215
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 339, 0

Conread position: 7-365
Cow position: chr14:25836222-25836580 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 218
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 196, 211

Conread position: 8-285
Cow position: chr14:25836559-25836836 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 122

Conread position: 8-291
Cow position: chr14:25784444-25784728 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 89

Conread position: 8-293
Cow position: chr14:25784360-25784645 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 181
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 195, 216

Conread position: 8-330
Cow position: chr14:447933-448255 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 198
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 223, 207

Conread position: 8-339
Cow position: chr14:25836475-25836806 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 202
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 8-339
Cow position: chr14:25836895-25837226 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 199
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 8-339
Cow position: chr14:25860200-25860531 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 203
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 195, 209

Conread position: 8-339
Cow position: chr14:25877251-25877582 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 205
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 195, 209

Conread position: 8-348
Cow position: chr14:3155417-3155757 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 221
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 223, 218

Conread position: 8-348
Cow position: chr14:3155990-3156330 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 222
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 8-355
Cow position: chr14:25860284-25860631 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 208
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-355
Cow position: chr14:25876747-25877094 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 51

Conread position: 8-355
Cow position: chr14:25877335-25877682 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 215
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 8-356
Cow position: chr14:3100745-3100397 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 215
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 28

Conread position: 8-358
Cow position: chr14:25895710-25896060 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 214
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 51, 58

Conread position: 8-361
Cow position: chr14:25784276-25784629 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 227
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 8-361
Cow position: chr14:25794502-25794149 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 218
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 146, 127

Conread position: 8-365
Cow position: chr14:25783604-25783961 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 214
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr14:25783772-25784129 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 221
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr14:25783940-25784297 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr14:25784108-25784465 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 64, 60

Conread position: 8-365
Cow position: chr14:25795006-25794649 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 218
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr14:25836391-25836748 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 214
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 210, 203

Conread position: 8-365
Cow position: chr14:25859696-25860053 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 219
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 280, 305

Conread position: 8-365
Cow position: chr14:25877167-25877524 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 218
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 51, 63

Conread position: 8-368
Cow position: chr14:25783520-25783880 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 8-375
Cow position: chr14:25784024-25784391 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 227
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 8-375
Cow position: chr14:25795342-25794975 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 229
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 52, 24

Conread position: 8-380
Cow position: chr14:25795090-25794718 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 231
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 43

Conread position: 9-356
Cow position: chr14:25784193-25784540 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 332, 344

Conread position: 9-365
Cow position: chr14:25859277-25859633 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 211
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-375
Cow position: chr14:25783689-25784055 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 219
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 10-365
Cow position: chr14:25783438-25783793 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 226
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 11-339
Cow position: chr14:680906-681234 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 212
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 59, 65

Conread position: 12-356
Cow position: chr14:3080834-3080490 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 58

Conread position: 15-285
Cow position: chr14:680994-681264 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 175
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 51, 46

Conread position: 15-333
Cow position: chr14:3079991-3079673 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 205
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 60

Conread position: 15-348
Cow position: chr14:3080579-3080246 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 210
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 125, 117

Conread position: 16-355
Cow position: chr14:25876335-25876674 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 204
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 82, 72

Conread position: 17-365
Cow position: chr14:3128005-3127657 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 225
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 18, 40

Conread position: 23-361
Cow position: chr14:25876510-25876848 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 201, 188

Conread position: 26-378
Cow position: chr14:25859462-25859815 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 222
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 122, 104

Conread position: 39-365
Cow position: chr14:25783297-25783625 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 212
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 189

Conread position: 47-355
Cow position: chr14:25859651-25859959 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 191
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 267, 248

Conread position: 55-375
Cow position: chr14:25783903-25784223 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 209
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 65-338
Cow position: chr14:680372-680644 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 174
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 270, 0

Conread position: 65-339
Cow position: chr14:25836196-25836470 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 250, 246

Conread position: 65-357
Cow position: chr14:25876636-25876928 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 189
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 66

Conread position: 65-359
Cow position: chr14:25860425-25860719 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 153, 136

Conread position: 71-365
Cow position: chr14:25876726-25877020 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 191
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 239, 247

Conread position: 74-348
Cow position: chr14:3061247-3060973 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 170
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 75-339
Cow position: chr14:447580-447844 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 158, 151

Conread position: 77-354
Cow position: chr14:3100844-3100567 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 147, 129

Conread position: 83-348
Cow position: chr14:3155408-3155673 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 83-350
Cow position: chr14:3080847-3080579 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 52

Conread position: 167-375
Cow position: chr14:3155408-3155616 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 138
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.