Cow genome map
| Conread name: | rcsk08_h15.y1 |
| Conread position: | 1-291 |
| Cow position: | chr17:22589513-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 129, 146 |
| Conread position: | 1-333 |
| Cow position: | chr17:22551843-22551511 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 140, 124 |
| Conread position: | 1-338 |
| Cow position: | chr17:22590185-22589848 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 233, 220 |
| Conread position: | 1-341 |
| Cow position: | chr17:22590101-22589761 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 1-348 |
| Cow position: | chr17:22552179-22551832 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 1-356 |
| Cow position: | chr17:22498806-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 1-368 |
| Cow position: | chr17:22589765-22589398 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 137 |
| Conread position: | 1-375 |
| Cow position: | chr17:22552011-22551637 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 232, 226 |
| Conread position: | 6-369 |
| Cow position: | chr17:22452123-22451760 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 220 |
| Conread position: | 7-339 |
| Cow position: | chr17:22552425-22552093 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 7-346 |
| Cow position: | chr17:22552761-22552422 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 134, 121 |
| Conread position: | 8-339 |
| Cow position: | chr17:22452205-22451874 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 8-339 |
| Cow position: | chr17:22551920-22551589 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 223, 198 |
| Conread position: | 8-339 |
| Cow position: | chr17:22552256-22551925 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 123 |
| Conread position: | 8-339 |
| Cow position: | chr17:22552844-22552513 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 274, 292 |
| Conread position: | 8-341 |
| Cow position: | chr17:22552508-22552175 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 8-341 |
| Cow position: | chr17:22552592-22552259 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 8-348 |
| Cow position: | chr17:22499303-22498963 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 8-348 |
| Cow position: | chr17:22589926-22589586 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 8-348 |
| Cow position: | chr17:22590010-22589670 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 134, 123 |
| Conread position: | 8-354 |
| Cow position: | chr17:22589590-22589244 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-358 |
| Cow position: | chr17:22498967-22498617 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 132, 125 |
| Conread position: | 8-364 |
| Cow position: | chr17:22473426-22473782 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 309, 291 |
| Conread position: | 8-365 |
| Cow position: | chr17:22499135-22498778 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 8-365 |
| Cow position: | chr17:22499387-22499030 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 224, 218 |
| Conread position: | 8-365 |
| Cow position: | chr17:22552676-22552319 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 304, 310 |
| Conread position: | 8-375 |
| Cow position: | chr17:22452373-22452006 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 226, 213 |
| Conread position: | 8-375 |
| Cow position: | chr17:22473510-22473877 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 310, 303 |
| Conread position: | 8-379 |
| Cow position: | chr17:22552928-22552557 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 11-339 |
| Cow position: | chr17:22473345-22473673 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 11-365 |
| Cow position: | chr17:22553093-22552739 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 11-389 |
| Cow position: | chr17:22473597-22473976 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 137, 124 |
| Conread position: | 17-365 |
| Cow position: | chr17:22499042-22498694 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 109 |
| Conread position: | 17-375 |
| Cow position: | chr17:22452280-22451922 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 293, 301 |
| Conread position: | 17-375 |
| Cow position: | chr17:22552331-22551973 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 116 |
| Conread position: | 21-375 |
| Cow position: | chr17:22552999-22552645 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 130, 122 |
| Conread position: | 23-338 |
| Cow position: | chr17:22590247-22589932 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 106, 116 |
| Conread position: | 56-333 |
| Cow position: | chr17:22499171-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 176, 170 |
| Conread position: | 56-365 |
| Cow position: | chr17:22452409-22452100 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 161, 156 |
| Conread position: | 101-338 |
| Cow position: | chr17:22590253-22590016 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 184, 194 |
Show alignments to all cow chromosomes.