Cow genome map
| Conread name: | rcsk08_h15.y1 |
| Conread position: | 1-253 |
| Cow position: | chr19:14959078-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 172, 181 |
| Conread position: | 1-257 |
| Cow position: | chr19:23614862-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 138, 124 |
| Conread position: | 1-337 |
| Cow position: | chr19:23597367-23597702 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 210, 218 |
| Conread position: | 1-339 |
| Cow position: | chr19:14940494-14940832 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-339 |
| Cow position: | chr19:23597115-23597453 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 1-356 |
| Cow position: | chr19:23613350-23613705 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 1-357 |
| Cow position: | chr19:23613434-23613790 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 128, 140 |
| Conread position: | 1-365 |
| Cow position: | chr19:14940242-14940606 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 232, 227 |
| Conread position: | 1-365 |
| Cow position: | chr19:20677869-20678233 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 126 |
| Conread position: | 1-365 |
| Cow position: | chr19:23614526-23614890 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 139, 119 |
| Conread position: | 1-375 |
| Cow position: | chr19:23613518-23613892 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 1-375 |
| Cow position: | chr19:23614106-23614480 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 144, 133 |
| Conread position: | 1-379 |
| Cow position: | chr19:20678289-20678668 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 128 |
| Conread position: | 2-263 |
| Cow position: | chr19:43569969-43569709 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 237, 211 |
| Conread position: | 7-339 |
| Cow position: | chr19:23649310-23649642 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 227, 215 |
| Conread position: | 7-341 |
| Cow position: | chr19:20677707-20678041 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 227, 219 |
| Conread position: | 7-357 |
| Cow position: | chr19:23597205-23597555 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 218, 205 |
| Conread position: | 7-365 |
| Cow position: | chr19:23613692-23614050 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 139, 122 |
| Conread position: | 7-365 |
| Cow position: | chr19:23613944-23614302 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-370 |
| Cow position: | chr19:14960049-14959690 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 166, 175 |
| Conread position: | 7-375 |
| Cow position: | chr19:20677791-20678159 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 232, 215 |
| Conread position: | 7-375 |
| Cow position: | chr19:23614700-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 227, 210 |
| Conread position: | 7-375 |
| Cow position: | chr19:23649562-23649930 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 8-255 |
| Cow position: | chr19:14959560-14959313 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 8-325 |
| Cow position: | chr19:23614785-23615102 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 226, 212 |
| Conread position: | 8-331 |
| Cow position: | chr19:14940753-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 226, 220 |
| Conread position: | 8-336 |
| Cow position: | chr19:20635372-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 8-336 |
| Cow position: | chr19:23650151-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 123, 141 |
| Conread position: | 8-339 |
| Cow position: | chr19:23649731-23650062 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 8-341 |
| Cow position: | chr19:43570215-43569882 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 139, 127 |
| Conread position: | 8-342 |
| Cow position: | chr19:14940082-14940415 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 226, 9 |
| Conread position: | 8-348 |
| Cow position: | chr19:23650067-23650407 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-348 |
| Cow position: | chr19:43570131-43569791 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 295, 280 |
| Conread position: | 8-356 |
| Cow position: | chr19:20635456-20635108 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 124, 132 |
| Conread position: | 8-356 |
| Cow position: | chr19:23614029-23614377 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 132, 121 |
| Conread position: | 8-357 |
| Cow position: | chr19:23596873-23597219 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 8-357 |
| Cow position: | chr19:23597290-23597639 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-357 |
| Cow position: | chr19:23613777-23614126 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 8-365 |
| Cow position: | chr19:14940333-14940690 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 223, 218 |
| Conread position: | 8-365 |
| Cow position: | chr19:14940585-14940942 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 203, 216 |
| Conread position: | 8-365 |
| Cow position: | chr19:14960298-14959943 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 8-365 |
| Cow position: | chr19:20635540-20635183 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 146, 126 |
| Conread position: | 8-365 |
| Cow position: | chr19:20677960-20678317 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 8-365 |
| Cow position: | chr19:23613609-23613966 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 297, 287 |
| Conread position: | 8-365 |
| Cow position: | chr19:23614197-23614554 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-365 |
| Cow position: | chr19:23614281-23614638 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 226, 220 |
| Conread position: | 8-365 |
| Cow position: | chr19:23649647-23650004 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-365 |
| Cow position: | chr19:23649815-23650172 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 8-375 |
| Cow position: | chr19:14960132-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 226, 213 |
| Conread position: | 8-375 |
| Cow position: | chr19:23613861-23614228 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 81, 93 |
| Conread position: | 8-375 |
| Cow position: | chr19:23614617-23614984 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 213, 225 |
| Conread position: | 8-381 |
| Cow position: | chr19:20678044-20678418 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 9-356 |
| Cow position: | chr19:14959232-14958891 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 225, 111 |
| Conread position: | 9-375 |
| Cow position: | chr19:20635623-20635257 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-357 |
| Cow position: | chr19:23649901-23650248 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 11-357 |
| Cow position: | chr19:23649986-23650332 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-365 |
| Cow position: | chr19:14960379-14960027 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 11-365 |
| Cow position: | chr19:20678215-20678569 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 126, 116 |
| Conread position: | 12-365 |
| Cow position: | chr19:14948453-14948101 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 13-347 |
| Cow position: | chr19:14948369-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 305, 298 |
| Conread position: | 15-341 |
| Cow position: | chr19:23597045-23597371 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 217, 196 |
| Conread position: | 17-365 |
| Cow position: | chr19:20677633-20677981 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 125 |
| Conread position: | 22-361 |
| Cow position: | chr19:14959712-14959375 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 61 |
| Conread position: | 23-348 |
| Cow position: | chr19:14940684-14941009 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 49, 45 |
| Conread position: | 23-357 |
| Cow position: | chr19:14940180-14940514 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 23-365 |
| Cow position: | chr19:23596972-23597311 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 26-355 |
| Cow position: | chr19:23614467-23614796 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 281, 272 |
| Conread position: | 47-337 |
| Cow position: | chr19:14959116-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 162, 179 |
| Conread position: | 49-365 |
| Cow position: | chr19:23649436-23649752 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 185, 169 |
| Conread position: | 60-368 |
| Cow position: | chr19:43570247-43569939 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 92, 73 |
| Conread position: | 69-359 |
| Cow position: | chr19:20677602-20677892 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 71-291 |
| Cow position: | chr19:20635645-20635425 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-357 |
| Cow position: | chr19:23649548-23649828 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 155, 136 |
| Conread position: | 81-368 |
| Cow position: | chr19:14960477-14960190 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 153, 147 |
| Conread position: | 83-360 |
| Cow position: | chr19:14939988-14940266 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 154-365 |
| Cow position: | chr19:20635646-20635435 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 159-365 |
| Cow position: | chr19:20677607-20677813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.