Cow genome map

Conread name: rcsk08_h15.y1

Conread position: 1-257
Cow position: chr22:12430900-12430644 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 128, 138

Conread position: 1-294
Cow position: chr22:14468227-14468520 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 184
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 271, 276

Conread position: 1-340
Cow position: chr22:12399088-12398749 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 227
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 130, 149

Conread position: 1-348
Cow position: chr22:12399172-12398825 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 225
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 224, 211

Conread position: 1-352
Cow position: chr22:12385246-12384894 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 225
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 130, 139

Conread position: 1-356
Cow position: chr22:12399256-12398901 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 293

Conread position: 1-356
Cow position: chr22:12475717-12475362 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 56, 49

Conread position: 1-356
Cow position: chr22:12499542-12499897 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 56, 49

Conread position: 1-365
Cow position: chr22:12399592-12399228 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 236
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 146, 125

Conread position: 1-365
Cow position: chr22:12432076-12431712 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 219
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-365
Cow position: chr22:14429730-14430094 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 226
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 96

Conread position: 2-257
Cow position: chr22:11641195-11641452 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 230, 216

Conread position: 2-354
Cow position: chr22:12475632-12475279 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 139, 133

Conread position: 2-355
Cow position: chr22:12431319-12430966 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 129, 138

Conread position: 2-358
Cow position: chr22:11666532-11666888 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 228
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 49

Conread position: 3-358
Cow position: chr22:11701271-11701626 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 226
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 134

Conread position: 7-285
Cow position: chr22:12431734-12431456 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 46

Conread position: 7-339
Cow position: chr22:12431062-12430730 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 210
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 112, 126

Conread position: 7-348
Cow position: chr22:12418853-12418512 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 215
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 7-348
Cow position: chr22:12458434-12458093 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 82, 90

Conread position: 7-355
Cow position: chr22:46654187-46654535 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 216
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 143, 128

Conread position: 7-357
Cow position: chr22:11641032-11641382 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 134, 113

Conread position: 7-357
Cow position: chr22:12431482-12431132 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 63, 69

Conread position: 7-357
Cow position: chr22:12458098-12457746 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 227, 215

Conread position: 7-357
Cow position: chr22:12476047-12475697 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 220
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 118, 132

Conread position: 7-364
Cow position: chr22:11640864-11641221 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 234
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 119, 130

Conread position: 7-365
Cow position: chr22:11640696-11641054 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 228
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 63, 69

Conread position: 7-368
Cow position: chr22:12431650-12431289 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 112, 132

Conread position: 7-368
Cow position: chr22:12475879-12475518 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 43

Conread position: 7-368
Cow position: chr22:12499380-12499741 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 240
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 43

Conread position: 7-375
Cow position: chr22:12458266-12457898 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 302, 288

Conread position: 8-333
Cow position: chr22:11641117-11641442 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 197
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-348
Cow position: chr22:12385323-12384983 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-350
Cow position: chr22:12418768-12418426 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 209
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 226, 218

Conread position: 8-354
Cow position: chr22:12476130-12475784 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 221
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 288, 306

Conread position: 8-355
Cow position: chr22:12385661-12385312 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 147, 106

Conread position: 8-356
Cow position: chr22:12385407-12385059 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 229
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 30, 40

Conread position: 8-356
Cow position: chr22:12431229-12430881 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 220
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 8-357
Cow position: chr22:12475794-12475445 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 226, 204

Conread position: 8-357
Cow position: chr22:12499213-12499562 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 117, 131

Conread position: 8-360
Cow position: chr22:12399333-12398980 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 299

Conread position: 8-360
Cow position: chr22:14468066-14468419 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 222
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 119, 141

Conread position: 8-365
Cow position: chr22:11640950-11641306 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 225
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 5

Conread position: 8-365
Cow position: chr22:12385493-12385134 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 230
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 85, 0

Conread position: 8-365
Cow position: chr22:12399669-12399312 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr22:12431985-12431628 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 227
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 224, 219

Conread position: 8-365
Cow position: chr22:12432153-12431796 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 227
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 123, 132

Conread position: 8-365
Cow position: chr22:12458517-12458160 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr22:12476214-12475857 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 221
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 8-365
Cow position: chr22:12476298-12475941 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 229
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 224, 219

Conread position: 8-365
Cow position: chr22:12498961-12499318 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 230
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 276, 283

Conread position: 8-365
Cow position: chr22:12499045-12499402 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 192, 199

Conread position: 8-368
Cow position: chr22:12399417-12399057 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 306

Conread position: 8-368
Cow position: chr22:12432321-12431961 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 231
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 132, 117

Conread position: 8-375
Cow position: chr22:12475962-12475595 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 290, 302

Conread position: 8-375
Cow position: chr22:12499129-12499496 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 108, 115

Conread position: 8-375
Cow position: chr22:12499297-12499664 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 237
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 211, 203

Conread position: 8-379
Cow position: chr22:12431901-12431529 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 149, 125

Conread position: 9-365
Cow position: chr22:12399914-12399564 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 231
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 75, 0

Conread position: 10-341
Cow position: chr22:12458179-12457846 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 42

Conread position: 11-247
Cow position: chr22:11701447-11701683 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 132, 122

Conread position: 11-339
Cow position: chr22:12419017-12418689 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 223, 210

Conread position: 11-341
Cow position: chr22:12430974-12430644 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 11-357
Cow position: chr22:12432486-12432140 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 211
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 276, 285

Conread position: 11-357
Cow position: chr22:12458346-12458000 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 223
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 141, 123

Conread position: 11-364
Cow position: chr22:11701111-11701464 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 226
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 22

Conread position: 11-365
Cow position: chr22:11666457-11666811 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 217
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 35, 22

Conread position: 11-365
Cow position: chr22:12458598-12458244 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 11-365
Cow position: chr22:12476379-12476025 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 192, 215

Conread position: 11-367
Cow position: chr22:12431142-12430788 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 223, 217

Conread position: 11-374
Cow position: chr22:14467985-14468348 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 219
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 307, 283

Conread position: 17-375
Cow position: chr22:12418927-12418569 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 224
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 217, 211

Conread position: 22-339
Cow position: chr22:12498891-12499208 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 204

Conread position: 23-358
Cow position: chr22:11640796-11641131 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 214
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 193, 210

Conread position: 23-365
Cow position: chr22:12399822-12399480 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 236
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 129, 112

Conread position: 26-355
Cow position: chr22:12399735-12399406 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 112, 100

Conread position: 50-341
Cow position: chr22:12385703-12385412 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 33

Conread position: 64-368
Cow position: chr22:12476410-12476106 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 192
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 171, 163

Conread position: 64-368
Cow position: chr22:12498849-12499153 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 197
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 38

Conread position: 71-365
Cow position: chr22:12458622-12458328 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 98-348
Cow position: chr22:12419014-12418764 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 167
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 136, 130

Conread position: 100-365
Cow position: chr22:14467990-14468255 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 169
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 128, 111

Conread position: 101-375
Cow position: chr22:12399906-12399638 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 180
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 172, 34

Conread position: 131-365
Cow position: chr22:12385708-12385472 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 156
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 38

Conread position: 147-334
Cow position: chr22:12545390-12545577 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 82

Show alignments to all cow chromosomes.