Cow genome map
| Conread name: | rcsk08_h15.y1 |
| Conread position: | 1-251 |
| Cow position: | chr23:24654117-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 215, 200 |
| Conread position: | 1-290 |
| Cow position: | chr23:24522484-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 1-348 |
| Cow position: | chr23:24547330-24546983 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 140, 134 |
| Conread position: | 1-348 |
| Cow position: | chr23:25626030-25626377 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 1-355 |
| Cow position: | chr23:24522733-24522382 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 161, 122 |
| Conread position: | 1-362 |
| Cow position: | chr23:24626392-24626751 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 145, 130 |
| Conread position: | 1-368 |
| Cow position: | chr23:24639468-24639835 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 230, 205 |
| Conread position: | 1-380 |
| Cow position: | chr23:25626114-25626494 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 148, 129 |
| Conread position: | 2-375 |
| Cow position: | chr23:24522814-24522446 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 145, 24 |
| Conread position: | 7-339 |
| Cow position: | chr23:25660241-25660573 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 7-341 |
| Cow position: | chr23:24560464-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 225, 220 |
| Conread position: | 7-348 |
| Cow position: | chr23:24639642-24639983 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 311, 304 |
| Conread position: | 7-355 |
| Cow position: | chr23:24522643-24522298 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 7-355 |
| Cow position: | chr23:24639726-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 137, 127 |
| Conread position: | 7-356 |
| Cow position: | chr23:25698566-25698217 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 7-365 |
| Cow position: | chr23:24522562-24522204 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 143, 124 |
| Conread position: | 7-365 |
| Cow position: | chr23:24560632-24560274 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-375 |
| Cow position: | chr23:25626456-25626821 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 8-264 |
| Cow position: | chr23:24535786-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-331 |
| Cow position: | chr23:25724036-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 310, 303 |
| Conread position: | 8-335 |
| Cow position: | chr23:25660410-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 122 |
| Conread position: | 8-339 |
| Cow position: | chr23:24547071-24546740 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 201, 212 |
| Conread position: | 8-341 |
| Cow position: | chr23:24546987-24546654 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 8-342 |
| Cow position: | chr23:25660326-25660660 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 215, 203 |
| Conread position: | 8-348 |
| Cow position: | chr23:24560799-24560459 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 8-348 |
| Cow position: | chr23:24639559-24639899 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-355 |
| Cow position: | chr23:24547155-24546808 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 285, 295 |
| Conread position: | 8-357 |
| Cow position: | chr23:24560547-24560198 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 142, 114 |
| Conread position: | 8-357 |
| Cow position: | chr23:25626622-25626971 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 224, 193 |
| Conread position: | 8-365 |
| Cow position: | chr23:24547239-24546882 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 11-291 |
| Cow position: | chr23:25626208-25626489 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 11-333 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 221, 207 |
| Conread position: | 11-339 |
| Cow position: | chr23:24639226-24639554 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 11-348 |
| Cow position: | chr23:24639310-24639647 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 82 |
| Conread position: | 11-365 |
| Cow position: | chr23:24535867-24535513 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 221, 216 |
| Conread position: | 12-339 |
| Cow position: | chr23:24626319-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 222, 201 |
| Conread position: | 12-357 |
| Cow position: | chr23:24560879-24560534 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 222, 199 |
| Conread position: | 12-357 |
| Cow position: | chr23:24639395-24639740 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-357 |
| Cow position: | chr23:24536032-24535689 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 144, 119 |
| Conread position: | 14-365 |
| Cow position: | chr23:25660164-25660515 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 226, 212 |
| Conread position: | 17-348 |
| Cow position: | chr23:25724111-25723780 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 186, 199 |
| Conread position: | 17-375 |
| Cow position: | chr23:25626298-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 139, 117 |
| Conread position: | 22-365 |
| Cow position: | chr23:25625967-25626310 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 110 |
| Conread position: | 23-357 |
| Cow position: | chr23:24560700-24560366 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 211, 198 |
| Conread position: | 43-365 |
| Cow position: | chr23:24626266-24626588 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 191, 185 |
| Conread position: | 63-332 |
| Cow position: | chr23:25698678-25698409 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-348 |
| Cow position: | chr23:24560910-24560627 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-357 |
| Cow position: | chr23:24536051-24535773 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 172, 186 |
| Conread position: | 79-359 |
| Cow position: | chr23:25660145-25660426 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 81-348 |
| Cow position: | chr23:25724131-25723864 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 153, 146 |
| Conread position: | 101-341 |
| Cow position: | chr23:24654049-24654289 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 131, 119 |
Show alignments to all cow chromosomes.