Cow genome map
| Conread name: | rcsk08_h15.y1 |
| Conread position: | 1-285 |
| Cow position: | chr25:22235912-22236196 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 229, 219 |
| Conread position: | 1-333 |
| Cow position: | chr25:36800966-36801298 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 1-339 |
| Cow position: | chr25:34447357-34447695 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 140, 128 |
| Conread position: | 1-339 |
| Cow position: | chr25:34447525-34447854 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 1-339 |
| Cow position: | chr25:34732609-34732271 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-341 |
| Cow position: | chr25:23420466-23420808 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 1-356 |
| Cow position: | chr25:346447-346802 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-357 |
| Cow position: | chr25:34769705-34769349 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 155, 133 |
| Conread position: | 1-365 |
| Cow position: | chr25:34433523-34433884 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 255, 83 |
| Conread position: | 1-375 |
| Cow position: | chr25:34714117-34714491 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 130 |
| Conread position: | 1-375 |
| Cow position: | chr25:34769873-34769499 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-348 |
| Cow position: | chr25:33145017-33145360 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 138, 20 |
| Conread position: | 6-365 |
| Cow position: | chr25:33157469-33157110 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 229, 221 |
| Conread position: | 7-270 |
| Cow position: | chr25:33157048-33156786 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 7-283 |
| Cow position: | chr25:326586-326862 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 210, 197 |
| Conread position: | 7-286 |
| Cow position: | chr25:36801056-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 7-330 |
| Cow position: | chr25:23420556-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-339 |
| Cow position: | chr25:33127891-33128223 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 272, 267 |
| Conread position: | 7-339 |
| Cow position: | chr25:33299240-33299572 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 7-348 |
| Cow position: | chr25:25652361-25652702 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 202, 210 |
| Conread position: | 7-348 |
| Cow position: | chr25:33298736-33299077 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 7-348 |
| Cow position: | chr25:34447195-34447536 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 217, 204 |
| Conread position: | 7-356 |
| Cow position: | chr25:33299492-33299837 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 7-356 |
| Cow position: | chr25:36801380-36801729 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 281, 293 |
| Conread position: | 7-356 |
| Cow position: | chr25:36801632-36801977 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 227, 197 |
| Conread position: | 7-357 |
| Cow position: | chr25:33298820-33299170 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 7-357 |
| Cow position: | chr25:34770119-34769769 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-357 |
| Cow position: | chr25:36800888-36801238 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 7-365 |
| Cow position: | chr25:33127807-33128165 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-365 |
| Cow position: | chr25:33299156-33299514 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 7-365 |
| Cow position: | chr25:34769615-34769257 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-365 |
| Cow position: | chr25:34769783-34769425 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 307, 290 |
| Conread position: | 7-375 |
| Cow position: | chr25:33299324-33299692 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 7-375 |
| Cow position: | chr25:36800636-36801004 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 193, 224 |
| Conread position: | 8-294 |
| Cow position: | chr25:34769530-34769244 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-336 |
| Cow position: | chr25:33298653-33298981 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 8-339 |
| Cow position: | chr25:22235835-22236166 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 136, 120 |
| Conread position: | 8-339 |
| Cow position: | chr25:33145104-33145435 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 140 |
| Conread position: | 8-341 |
| Cow position: | chr25:22236003-22236336 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-341 |
| Cow position: | chr25:34770034-34769701 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 148, 126 |
| Conread position: | 8-348 |
| Cow position: | chr25:36800805-36801145 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 8-357 |
| Cow position: | chr25:33157383-33157034 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-357 |
| Cow position: | chr25:34447112-34447461 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 213, 226 |
| Conread position: | 8-357 |
| Cow position: | chr25:36801549-36801898 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 8-365 |
| Cow position: | chr25:33144939-33145293 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 230, 98 |
| Conread position: | 8-365 |
| Cow position: | chr25:33157299-33156942 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 127 |
| Conread position: | 8-365 |
| Cow position: | chr25:34447280-34447637 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 212 |
| Conread position: | 8-365 |
| Cow position: | chr25:34769950-34769593 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-372 |
| Cow position: | chr25:34447448-34447805 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 8-374 |
| Cow position: | chr25:36800721-36801087 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 201, 226 |
| Conread position: | 8-375 |
| Cow position: | chr25:23420389-23420756 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 124 |
| Conread position: | 8-375 |
| Cow position: | chr25:33298485-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 8-375 |
| Cow position: | chr25:33298569-33298936 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 8-380 |
| Cow position: | chr25:33305313-33304944 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 9-375 |
| Cow position: | chr25:34446945-34447311 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 125 |
| Conread position: | 11-365 |
| Cow position: | chr25:33298992-33299346 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 12-285 |
| Cow position: | chr25:326507-326780 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 121 |
| Conread position: | 12-357 |
| Cow position: | chr25:33144861-33145201 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 14-294 |
| Cow position: | chr25:34714214-34714494 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 16-360 |
| Cow position: | chr25:33305221-33304881 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 179, 104 |
| Conread position: | 16-365 |
| Cow position: | chr25:33305784-33305438 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 19-356 |
| Cow position: | chr25:23420316-23420653 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 196, 187 |
| Conread position: | 22-339 |
| Cow position: | chr25:33305944-33305633 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 183, 103 |
| Conread position: | 22-368 |
| Cow position: | chr25:33298919-33299265 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 23-356 |
| Cow position: | chr25:33127739-33128072 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 188 |
| Conread position: | 23-357 |
| Cow position: | chr25:33157116-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 25-365 |
| Cow position: | chr25:33299426-33299766 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 100 |
| Conread position: | 26-337 |
| Cow position: | chr25:326947-327258 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 191, 175 |
| Conread position: | 29-357 |
| Cow position: | chr25:33127661-33127989 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 59-351 |
| Cow position: | chr25:34433497-34433787 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 59-365 |
| Cow position: | chr25:34770151-34769845 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 60-375 |
| Cow position: | chr25:34713924-34714239 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 71-355 |
| Cow position: | chr25:326482-326766 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 72-348 |
| Cow position: | chr25:33157571-33157295 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 74-339 |
| Cow position: | chr25:36844632-36844367 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 146 |
| Conread position: | 77-348 |
| Cow position: | chr25:414781-414518 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 79-355 |
| Cow position: | chr25:326918-327192 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 79-357 |
| Cow position: | chr25:34732615-34732337 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 140, 145 |
| Conread position: | 83-339 |
| Cow position: | chr25:33144846-33145099 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 86-348 |
| Cow position: | chr25:22235829-22236091 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 115, 132 |
| Conread position: | 104-357 |
| Cow position: | chr25:23420317-23420570 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 27 |
Show alignments to all cow chromosomes.