Cow genome map
| Conread name: | rcsk08_h15.y1 |
| Conread position: | 1-246 |
| Cow position: | chr7:42878521-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 1-294 |
| Cow position: | chr7:18390245-18390538 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 1-339 |
| Cow position: | chr7:1015106-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 1-356 |
| Cow position: | chr7:42879025-42878670 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 140, 124 |
| Conread position: | 1-357 |
| Cow position: | chr7:3179948-3180304 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 151, 129 |
| Conread position: | 1-357 |
| Cow position: | chr7:11601104-11600748 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 145, 128 |
| Conread position: | 1-365 |
| Cow position: | chr7:3180032-3180396 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 227 |
| Conread position: | 1-365 |
| Cow position: | chr7:3180368-3180732 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 154, 130 |
| Conread position: | 1-365 |
| Cow position: | chr7:8325740-8326104 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 1-365 |
| Cow position: | chr7:18390329-18390693 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-375 |
| Cow position: | chr7:1014854-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 126, 140 |
| Conread position: | 2-332 |
| Cow position: | chr7:18390414-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 153, 132 |
| Conread position: | 7-291 |
| Cow position: | chr7:18390503-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 226, 221 |
| Conread position: | 7-330 |
| Cow position: | chr7:11600762-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-357 |
| Cow position: | chr7:1014776-1015126 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 7-365 |
| Cow position: | chr7:1439559-1439918 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 124, 43 |
| Conread position: | 7-365 |
| Cow position: | chr7:42878851-42878493 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 108, 114 |
| Conread position: | 7-368 |
| Cow position: | chr7:3179870-3180231 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-330 |
| Cow position: | chr7:42878598-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-339 |
| Cow position: | chr7:3180543-3180873 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 276, 254 |
| Conread position: | 8-341 |
| Cow position: | chr7:3180459-3180792 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 225, 220 |
| Conread position: | 8-342 |
| Cow position: | chr7:42878682-42878348 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 8-355 |
| Cow position: | chr7:42879102-42878755 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 213 |
| Conread position: | 8-357 |
| Cow position: | chr7:1015029-1015378 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 119, 132 |
| Conread position: | 8-357 |
| Cow position: | chr7:3180291-3180640 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 114 |
| Conread position: | 8-365 |
| Cow position: | chr7:8324907-8325264 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 8-365 |
| Cow position: | chr7:18390000-18390357 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 8-365 |
| Cow position: | chr7:42879186-42878829 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 213 |
| Conread position: | 8-368 |
| Cow position: | chr7:3180123-3180483 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-368 |
| Cow position: | chr7:3180207-3180567 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 8-368 |
| Cow position: | chr7:42878766-42878406 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 226, 204 |
| Conread position: | 8-375 |
| Cow position: | chr7:11601013-11600646 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 8-375 |
| Cow position: | chr7:42878934-42878567 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 9-292 |
| Cow position: | chr7:1439981-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 79, 88 |
| Conread position: | 9-360 |
| Cow position: | chr7:1439898-1440249 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 10-365 |
| Cow position: | chr7:3179705-3180060 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 222, 201 |
| Conread position: | 11-339 |
| Cow position: | chr7:1014696-1015024 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 144, 119 |
| Conread position: | 11-341 |
| Cow position: | chr7:1014948-1015278 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 298, 287 |
| Conread position: | 11-356 |
| Cow position: | chr7:3179790-3180135 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-365 |
| Cow position: | chr7:1439817-1440169 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 139, 45 |
| Conread position: | 11-368 |
| Cow position: | chr7:1014534-1014885 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 275, 128 |
| Conread position: | 11-368 |
| Cow position: | chr7:8324826-8325183 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 12-357 |
| Cow position: | chr7:11601177-11600832 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 329, 341 |
| Conread position: | 16-356 |
| Cow position: | chr7:42879262-42878922 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 212 |
| Conread position: | 23-310 |
| Cow position: | chr7:1438438-1438725 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 23-375 |
| Cow position: | chr7:18390099-18390451 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 26-375 |
| Cow position: | chr7:18390186-18390535 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 30-375 |
| Cow position: | chr7:42879333-42878987 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 50-368 |
| Cow position: | chr7:3179661-3179979 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 64-365 |
| Cow position: | chr7:1439448-1439752 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 144-375 |
| Cow position: | chr7:3179671-3179902 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 35 |
Show alignments to all cow chromosomes.