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Cow genome map

           
Conread name:
           
rcsp04b_a24.y1
        

               
Conread position:
               
1-156
               

               
Cow position:
               
chr1:29671058-29671210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:93590426-93590592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:759252-759430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:45315470-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:102529692-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:3965997-3965776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr1:54267779-54267997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:3942056-3942276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:80584589-80584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:33913992-33913736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
154, 26
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr1:90904596-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr1:77232406-77232668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 186
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:42482360-42482093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:69551318-69551594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr1:72356529-72356248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
22, 152
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr1:23998762-23999034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
36, 91
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:10716666-10716386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 126
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:58754637-58754911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr1:81477702-81477985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr1:261303-261596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:20104427-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr1:84283237-84282950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr1:4701509-4701797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr1:92197618-92197338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:81568868-81569161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
204, 21
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr1:79640128-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:4243169-4243476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:6078061-6077765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:21955211-21955506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
286, 26
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:25383830-25383529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 22
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:48581291-48580997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
275, 26
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:56618495-56618784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:62519527-62519224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
200, 44
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr1:75745024-75744727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:48105264-48105568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr1:54206658-54206953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
206, 27
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:196845-197139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:1980948-1981249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:7748379-7748082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
279, 51
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:14379389-14379670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
200, 24
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:31607725-31608032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:41056841-41056548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:53458859-53458561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:55705083-55705385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:61741802-61742103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:64803936-64804239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:71078801-71079091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 23
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:74084027-74084332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
190, 44
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:79844640-79844331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 195
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:83072603-83072308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 40
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:86110581-86110866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:88913481-88913183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 31
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:91023305-91023603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:96964480-96964185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
279, 44
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:101714277-101713986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
201, 36
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr1:49433100-49433399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
280, 26
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr1:70344208-70343901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
2-139
               

               
Cow position:
               
chr1:72069943-72070083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr1:21561180-21560987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr1:73020499-73020700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:8287470-8287670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
187, 42
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr1:95835635-95835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-217
               

               
Cow position:
               
chr1:31357347-31357556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
197, 16
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:73584245-73584497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
189, 47
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr1:100474399-100474145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr1:38419188-38418934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:49082906-49082641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
2-272
               

               
Cow position:
               
chr1:75250273-75250013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr1:4391108-4391384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr1:21577969-21577708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
178, 39
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr1:46031123-46030858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:89076461-89076734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr1:10617051-10616774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 40
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:3324034-3323761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:31765210-31765497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:71119681-71119408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
178, 32
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:86113236-86113515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr1:101822344-101822611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr1:43872149-43872455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr1:53374590-53374306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
278, 25
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr1:38277866-38278163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
184, 25
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr1:63434638-63434937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr1:86579132-86578819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 41
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr1:33206714-33207004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr1:34856465-34856770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
265, 40
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr1:78810044-78809747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
68, 77
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:635357-635056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
281, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:1956174-1956463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:2975829-2976130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
154, 31
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:6867302-6867612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
189, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:11913714-11914013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
128, 42
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:16766926-16767216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:16961834-16962145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 198
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:24777824-24778120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:28563401-28563704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:33409463-33409763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
188, 21
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:42175888-42175589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 22
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:43352493-43352792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
202, 25
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:47886320-47886624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
145, 30
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:54258729-54258428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:71228255-71227945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
187, 34
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:72068671-72068974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:72104014-72103711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
200, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:79591264-79590969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:84238951-84239248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr1:90975916-90976222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr1:99609527-99609230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
220, 21
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr1:13810811-13810512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
279, 46
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr1:19569015-19568712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 30
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr1:68763524-68763822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr1:6826131-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr1:874816-874511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr1:26201394-26201085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr1:49334231-49334410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
4-244
               

               
Cow position:
               
chr1:186114-186348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
54, 106
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr1:25735029-25734758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr1:7443140-7442858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
4-302
               

               
Cow position:
               
chr1:66898336-66898627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr1:34771338-34771635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr1:55357131-55357417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
276, 48
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr1:92996728-92997034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
198, 48
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr1:94226386-94226686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr1:101834977-101834684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr1:79660240-79660547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
290, 21
               

               
Conread position:
               
5-233
               

               
Cow position:
               
chr1:79004133-79003913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr1:95072500-95072266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr1:14308872-14309136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr1:71399451-71399184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chr1:83659118-83659396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
278, 30
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr1:78092197-78091905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
275, 37
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr1:20002071-20002376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 31
               

               
Conread position:
               
5-310
               

               
Cow position:
               
chr1:45555523-45555227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr1:9437123-9437426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
7-273
               

               
Cow position:
               
chr1:82513194-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
23, 44
               

               
Conread position:
               
8-258
               

               
Cow position:
               
chr1:78079877-78079635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
8-279
               

               
Cow position:
               
chr1:84905906-84906171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
182, 34
               

               
Conread position:
               
8-300
               

               
Cow position:
               
chr1:87095057-87095358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
189, 36
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr1:78857172-78857456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
9-188
               

               
Cow position:
               
chr1:101177675-101177497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 50
               

               
Conread position:
               
10-313
               

               
Cow position:
               
chr1:70297433-70297137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
271, 32
               

               
Conread position:
               
11-273
               

               
Cow position:
               
chr1:68276565-68276313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
212, 31
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chr1:95683216-95683402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr1:89741837-89742136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
14-308
               

               
Cow position:
               
chr1:91874766-91875043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
15-306
               

               
Cow position:
               
chr1:24876419-24876132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
16-308
               

               
Cow position:
               
chr1:47233322-47233614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 182
               

               
Conread position:
               
17-289
               

               
Cow position:
               
chr1:37886662-37886927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
183, 32
               

               
Conread position:
               
19-306
               

               
Cow position:
               
chr1:57297639-57297340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr1:68253745-68253456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
20-283
               

               
Cow position:
               
chr1:98512077-98511817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
38, 60
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr1:98551868-98551581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
23-236
               

               
Cow position:
               
chr1:86912588-86912375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 168
               

               
Conread position:
               
23-300
               

               
Cow position:
               
chr1:34300407-34300677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
24-249
               

               
Cow position:
               
chr1:98576190-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
24-306
               

               
Cow position:
               
chr1:51446029-51445746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
170, 28
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chr1:52995169-52994892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chr1:81613535-81613254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 0
               

               
Conread position:
               
25-179
               

               
Cow position:
               
chr1:31855101-31855256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
27-241
               

               
Cow position:
               
chr1:78067928-78068133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr1:8670915-8670733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
28-255
               

               
Cow position:
               
chr1:80841785-80841570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
28-257
               

               
Cow position:
               
chr1:8347262-8347039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
28-258
               

               
Cow position:
               
chr1:50992075-50991849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
28-292
               

               
Cow position:
               
chr1:81290648-81290388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 96
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:24406753-24407020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 166
               

               
Conread position:
               
28-306
               

               
Cow position:
               
chr1:85549937-85550211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:18780186-18780469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 209
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:22729195-22728916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
167, 21
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:49317355-49317632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
252, 31
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:53308253-53308524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 31
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:57900585-57900874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
94, 24
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:65909653-65909391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:73960839-73960570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:85162406-85162679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr1:89449038-89448762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
28-310
               

               
Cow position:
               
chr1:71253415-71253690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
28-313
               

               
Cow position:
               
chr1:7971555-7971281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
28-313
               

               
Cow position:
               
chr1:75933406-75933132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
29-227
               

               
Cow position:
               
chr1:99221214-99221409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
29-296
               

               
Cow position:
               
chr1:43388914-43389173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 23
               

               
Conread position:
               
29-299
               

               
Cow position:
               
chr1:89786049-89785784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
29-305
               

               
Cow position:
               
chr1:33330955-33331217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
29-306
               

               
Cow position:
               
chr1:40530964-40531250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
29-306
               

               
Cow position:
               
chr1:86682428-86682696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
232, 26
               

               
Conread position:
               
29-307
               

               
Cow position:
               
chr1:68855305-68855036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
29-308
               

               
Cow position:
               
chr1:41115576-41115850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 105
               

               
Conread position:
               
29-308
               

               
Cow position:
               
chr1:70829042-70828768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
29-314
               

               
Cow position:
               
chr1:41047164-41047441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
30-283
               

               
Cow position:
               
chr1:7023262-7023010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 202
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chr1:20205162-20204892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 21
               

               
Conread position:
               
31-308
               

               
Cow position:
               
chr1:95057181-95056920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr1:10941960-10942174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
32-249
               

               
Cow position:
               
chr1:10964426-10964212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr1:32001184-32001431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
173, 27
               

               
Conread position:
               
32-283
               

               
Cow position:
               
chr1:80422409-80422170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
32-308
               

               
Cow position:
               
chr1:61885050-61884784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
33-308
               

               
Cow position:
               
chr1:63530694-63530438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
247, 19
               

               
Conread position:
               
33-313
               

               
Cow position:
               
chr1:57420598-57420868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
34-201
               

               
Cow position:
               
chr1:41027208-41027044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
34-235
               

               
Cow position:
               
chr1:48206399-48206598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
24, 107
               

               
Conread position:
               
34-254
               

               
Cow position:
               
chr1:96947586-96947798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr1:43505662-43505389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
154, 18
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr1:53398109-53397856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr1:57575628-57575894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr1:101860350-101860624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr1:100800483-100800225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
35-308
               

               
Cow position:
               
chr1:24542437-24542717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
35-308
               

               
Cow position:
               
chr1:85647648-85647917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
35-308
               

               
Cow position:
               
chr1:95499363-95499627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
36-188
               

               
Cow position:
               
chr1:83025029-83025182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr1:78794100-78794335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr1:13637529-13637808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
215, 171
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr1:22827292-22827032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
87, 192
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr1:70538742-70538472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 12
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr1:93499755-93499491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
37-190
               

               
Cow position:
               
chr1:61011311-61011161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr1:64678830-64678566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
13, 167
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr1:81228198-81228475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 207
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chr1:95177071-95176804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
21, 42
               

               
Conread position:
               
38-283
               

               
Cow position:
               
chr1:92989723-92989479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
38-288
               

               
Cow position:
               
chr1:71350594-71350838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chr1:10778694-10778433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 15
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:38754053-38753782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:41697187-41696923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:52039769-52039501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:59519047-59518785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 26
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:81913026-81913283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
38-308
               

               
Cow position:
               
chr1:86073729-86073459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 158
               

               
Conread position:
               
39-283
               

               
Cow position:
               
chr1:27463264-27463021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
148, 98
               

               
Conread position:
               
42-301
               

               
Cow position:
               
chr1:10633175-10632920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
5, 148
               

               
Conread position:
               
42-301
               

               
Cow position:
               
chr1:71295164-71295437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
107, 190
               

               
Conread position:
               
42-307
               

               
Cow position:
               
chr1:3166947-3167203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr1:29935263-29935513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr1:56225595-56225331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr1:93554961-93554708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr1:97090456-97090192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
8, 197
               

               
Conread position:
               
43-282
               

               
Cow position:
               
chr1:55819180-55818951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
43-283
               

               
Cow position:
               
chr1:74928008-74927774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr1:30136227-30136418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr1:46143336-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
44-283
               

               
Cow position:
               
chr1:87937020-87936789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
44-284
               

               
Cow position:
               
chr1:67688456-67688692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 72
               

               
Conread position:
               
44-289
               

               
Cow position:
               
chr1:87072818-87072581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
83, 8
               

               
Conread position:
               
44-296
               

               
Cow position:
               
chr1:72105533-72105288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr1:42887154-42887400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr1:84811813-84812068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
147, 205
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr1:87197947-87197692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 189
               

               
Conread position:
               
46-248
               

               
Cow position:
               
chr1:35671661-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
48-283
               

               
Cow position:
               
chr1:54156612-54156842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 77
               

               
Conread position:
               
48-305
               

               
Cow position:
               
chr1:102756311-102756562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 39
               

               
Conread position:
               
48-306
               

               
Cow position:
               
chr1:84241002-84240759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr1:51968584-51968326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
161, 111
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr1:80988466-80988211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 12
               

               
Conread position:
               
48-311
               

               
Cow position:
               
chr1:67821101-67821348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 110
               

               
Conread position:
               
48-317
               

               
Cow position:
               
chr1:89230107-89230372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
49-222
               

               
Cow position:
               
chr1:95974521-95974345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr1:52662052-52662231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 105
               

               
Conread position:
               
49-237
               

               
Cow position:
               
chr1:67646360-67646164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
49-243
               

               
Cow position:
               
chr1:58037140-58036948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 85
               

               
Conread position:
               
49-252
               

               
Cow position:
               
chr1:48214037-48214241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
49-270
               

               
Cow position:
               
chr1:48769922-48769705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
212, 9
               

               
Conread position:
               
49-283
               

               
Cow position:
               
chr1:56225906-56225684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
170, 137
               

               
Conread position:
               
49-288
               

               
Cow position:
               
chr1:52052596-52052837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
49-306
               

               
Cow position:
               
chr1:44125517-44125780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
134, 81
               

               
Conread position:
               
49-306
               

               
Cow position:
               
chr1:72011692-72011943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
233, 141
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr1:22192890-22192628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr1:50045920-50045664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr1:76019576-76019828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr1:91066031-91066288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr1:93110494-93110757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
49-315
               

               
Cow position:
               
chr1:99642248-99642508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr1:31390468-31390725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr1:51394537-51394288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
166, 13
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chr1:36998305-36998057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
230, 121
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chr1:42545659-42545922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chr1:68618813-68619069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
51-301
               

               
Cow position:
               
chr1:93810547-93810301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
176, 9
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chr1:30047485-30047729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
52-225
               

               
Cow position:
               
chr1:92590309-92590142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
52-242
               

               
Cow position:
               
chr1:45223699-45223510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
52-245
               

               
Cow position:
               
chr1:89158007-89158202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr1:31499743-31499546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 103
               

               
Conread position:
               
52-251
               

               
Cow position:
               
chr1:98583871-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
52-253
               

               
Cow position:
               
chr1:37124251-37124045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
52-256
               

               
Cow position:
               
chr1:15902612-15902408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
52-259
               

               
Cow position:
               
chr1:21954107-21954318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
52-265
               

               
Cow position:
               
chr1:49824946-49825162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
52-265
               

               
Cow position:
               
chr1:82880762-82880552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr1:101866380-101866595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr1:102306028-102306243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
195, 53
               

               
Conread position:
               
52-273
               

               
Cow position:
               
chr1:51044191-51044406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
155, 37
               

               
Conread position:
               
52-274
               

               
Cow position:
               
chr1:28177122-28176908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
52-274
               

               
Cow position:
               
chr1:98360286-98360499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
144, 64
               

               
Conread position:
               
52-275
               

               
Cow position:
               
chr1:95153340-95153117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
159, 102
               

               
Conread position:
               
52-280
               

               
Cow position:
               
chr1:5580173-5579947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
165, 21
               

               
Conread position:
               
52-282
               

               
Cow position:
               
chr1:78697654-78697878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:3352582-3352804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:15334009-15333774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 84
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:45553125-45553354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
151, 79
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:69694875-69695102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
96, 112
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:81580295-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr1:84255885-84255653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
52-291
               

               
Cow position:
               
chr1:42541716-42541477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
194, 140
               

               
Conread position:
               
52-295
               

               
Cow position:
               
chr1:43311653-43311898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
52-301
               

               
Cow position:
               
chr1:8349206-8349445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
52-301
               

               
Cow position:
               
chr1:74822569-74822327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 144
               

               
Conread position:
               
52-305
               

               
Cow position:
               
chr1:75347742-75347488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
52-305
               

               
Cow position:
               
chr1:89341862-89342127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr1:19466169-19465924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr1:78838913-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr1:85029072-85028825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr1:34159954-34159700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 126
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr1:53671632-53671873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr1:100706244-100705995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
223, 89
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:4032750-4032490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:4291282-4291023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
93, 78
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:5135592-5135829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:8128851-8129102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:20000631-20000886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
131, 26
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:22525996-22525743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
146, 133
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:24534139-24534389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:35162528-35162272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
228, 138
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:37321884-37322137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
149, 72
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:41252292-41252533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
102, 84
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:50345663-50345411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:50930861-50931111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:54478447-54478189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
138, 158
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:61391673-61391924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
141, 16
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:64302126-64302383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:68817681-68817934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 78
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:69678207-69678457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:72732158-72731903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:83582815-83583069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:88652754-88652495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:93044135-93043894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:93528819-93528559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:97696862-97696605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:98031040-98030783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
140, 26
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:100393045-100393296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
93, 135
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr1:100552093-100551833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
52-310
               

               
Cow position:
               
chr1:17196509-17196766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
244, 0
               

               
Conread position:
               
52-312
               

               
Cow position:
               
chr1:6972644-6972392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr1:6941586-6941325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr1:6958999-6958738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr1:11729293-11729041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr1:39068838-39069095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
54-179
               

               
Cow position:
               
chr1:52429544-52429669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
54-219
               

               
Cow position:
               
chr1:97833823-97833663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
54-225
               

               
Cow position:
               
chr1:43286461-43286291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
54-272
               

               
Cow position:
               
chr1:724856-724638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
54-275
               

               
Cow position:
               
chr1:19226941-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
54-281
               

               
Cow position:
               
chr1:6752115-6752336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
104, 144
               

               
Conread position:
               
54-289
               

               
Cow position:
               
chr1:85866275-85866032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
111, 197
               

               
Conread position:
               
54-306
               

               
Cow position:
               
chr1:19481966-19482208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr1:64250936-64251187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
106, 76
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr1:70435113-70434868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
54-315
               

               
Cow position:
               
chr1:83748058-83747804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 72
               

               
Conread position:
               
55-175
               

               
Cow position:
               
chr1:99605072-99605192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-193
               

               
Cow position:
               
chr1:80442859-80442720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 71
               

               
Conread position:
               
55-218
               

               
Cow position:
               
chr1:57091093-57090930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-283
               

               
Cow position:
               
chr1:22943913-22944136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 18
               

               
Conread position:
               
55-305
               

               
Cow position:
               
chr1:3720329-3720566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr1:38401914-38401659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
57-194
               

               
Cow position:
               
chr1:27959438-27959574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
57-251
               

               
Cow position:
               
chr1:52467416-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
57-270
               

               
Cow position:
               
chr1:30189265-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
57-283
               

               
Cow position:
               
chr1:43822512-43822290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
175, 76
               

               
Conread position:
               
57-297
               

               
Cow position:
               
chr1:92369847-92369608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
93, 25
               

               
Conread position:
               
57-304
               

               
Cow position:
               
chr1:4414095-4414339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
57-304
               

               
Cow position:
               
chr1:89509808-89510053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
57-305
               

               
Cow position:
               
chr1:64572628-64572381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
57-306
               

               
Cow position:
               
chr1:80900232-80899978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
228, 28
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr1:25281544-25281811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr1:37706864-37707100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 73
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr1:69539804-69539562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr1:82936484-82936721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr1:91039061-91039308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
223, 81
               

               
Conread position:
               
57-309
               

               
Cow position:
               
chr1:68826799-68827042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
221, 67
               

               
Conread position:
               
57-310
               

               
Cow position:
               
chr1:100762190-100761942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
58-227
               

               
Cow position:
               
chr1:81481270-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
58-286
               

               
Cow position:
               
chr1:68845057-68845270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
193, 122
               

               
Conread position:
               
58-286
               

               
Cow position:
               
chr1:98060174-98059936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
58-297
               

               
Cow position:
               
chr1:31272330-31272565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
58-301
               

               
Cow position:
               
chr1:89381387-89381146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
58-302
               

               
Cow position:
               
chr1:100324639-100324872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
58-308
               

               
Cow position:
               
chr1:82884283-82884525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
59-268
               

               
Cow position:
               
chr1:30417937-30418133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
59-283
               

               
Cow position:
               
chr1:61542808-61543028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
59-295
               

               
Cow position:
               
chr1:56477703-56477468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
145, 219
               

               
Conread position:
               
59-300
               

               
Cow position:
               
chr1:42868829-42869063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
174, 77
               

               
Conread position:
               
59-306
               

               
Cow position:
               
chr1:37309408-37309647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
218, 130
               

               
Conread position:
               
59-306
               

               
Cow position:
               
chr1:51417882-51417640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr1:12978793-12978545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr1:68863142-68862898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
149, 74
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr1:82337669-82337916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr1:101632226-101632474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
59-313
               

               
Cow position:
               
chr1:21787447-21787190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
144, 133
               

               
Conread position:
               
59-313
               

               
Cow position:
               
chr1:36932265-36932017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
59-313
               

               
Cow position:
               
chr1:60281484-60281230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
137, 161
               

               
Conread position:
               
60-264
               

               
Cow position:
               
chr1:4581220-4581418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
60-304
               

               
Cow position:
               
chr1:39509948-39510180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
60-306
               

               
Cow position:
               
chr1:89350075-89349829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr1:100450066-100450318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr1:102785063-102784829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:14206043-14206291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
129, 76
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:39224816-39225060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:44507083-44506832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:74955911-74956157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
146, 76
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:77683462-77683222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr1:96276941-96277190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
60-313
               

               
Cow position:
               
chr1:26702097-26702348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
136, 76
               

               
Conread position:
               
61-308
               

               
Cow position:
               
chr1:81868620-81868861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
62-253
               

               
Cow position:
               
chr1:61012421-61012229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
62-306
               

               
Cow position:
               
chr1:42555374-42555129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
118, 152
               

               
Conread position:
               
62-308
               

               
Cow position:
               
chr1:81355595-81355841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
77, 207
               

               
Conread position:
               
63-268
               

               
Cow position:
               
chr1:99793654-99793446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
63-272
               

               
Cow position:
               
chr1:39426898-39427101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
63-299
               

               
Cow position:
               
chr1:92434106-92433874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr1:7350654-7350407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr1:27145546-27145785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr1:101634819-101634569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
129, 108
               

               
Conread position:
               
64-297
               

               
Cow position:
               
chr1:3789963-3790190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
98, 63
               

               
Conread position:
               
64-308
               

               
Cow position:
               
chr1:20667636-20667877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
65-283
               

               
Cow position:
               
chr1:65028639-65028419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
65-306
               

               
Cow position:
               
chr1:85774562-85774327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
105, 128
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr1:18936731-18936965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
11, 6
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr1:45288766-45289007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
219, 127
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr1:55146902-55146670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr1:62291596-62291826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
66-202
               

               
Cow position:
               
chr1:60466333-60466194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
67-310
               

               
Cow position:
               
chr1:68217264-68217496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
124, 10
               

               
Conread position:
               
68-258
               

               
Cow position:
               
chr1:12725426-12725611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
68-297
               

               
Cow position:
               
chr1:65904897-65905131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr1:56635200-56634964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
128, 108
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr1:102349648-102349888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chr1:81563847-81563601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chr1:91816670-91816905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chr1:96478801-96478557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
69-308
               

               
Cow position:
               
chr1:20384522-20384755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 72
               

               
Conread position:
               
72-188
               

               
Cow position:
               
chr1:40935669-40935785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-308
               

               
Cow position:
               
chr1:91800500-91800737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
72-313
               

               
Cow position:
               
chr1:43703507-43703267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
73-306
               

               
Cow position:
               
chr1:53425273-53425041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
62, 5
               

               
Conread position:
               
73-308
               

               
Cow position:
               
chr1:90868345-90868574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
75-308
               

               
Cow position:
               
chr1:94261631-94261407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
205, 96
               

               
Conread position:
               
77-313
               

               
Cow position:
               
chr1:60707496-60707266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
206, 64
               

               
Conread position:
               
78-307
               

               
Cow position:
               
chr1:5023670-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
78-307
               

               
Cow position:
               
chr1:40600137-40599909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
118, 143
               

               
Conread position:
               
83-283
               

               
Cow position:
               
chr1:89485667-89485465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
83-304
               

               
Cow position:
               
chr1:68951712-68951496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
83-306
               

               
Cow position:
               
chr1:101946627-101946843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr1:34686267-34686059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr1:70026258-70026479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 112
               

               
Conread position:
               
84-308
               

               
Cow position:
               
chr1:86340382-86340608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
84-313
               

               
Cow position:
               
chr1:23186713-23186937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
86-306
               

               
Cow position:
               
chr1:26729797-26729591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr1:23512575-23512790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr1:79164999-79165221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
194, 41
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr1:98311156-98310930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
89-253
               

               
Cow position:
               
chr1:61560642-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
89-295
               

               
Cow position:
               
chr1:3429428-3429635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
182, 133
               

               
Conread position:
               
89-306
               

               
Cow position:
               
chr1:85597019-85596805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
195, 60
               

               
Conread position:
               
89-306
               

               
Cow position:
               
chr1:89498034-89497832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
114, 26
               

               
Conread position:
               
89-308
               

               
Cow position:
               
chr1:57880703-57880924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
192, 119
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr1:6788202-6788426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr1:9470316-9470538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
7, 112
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr1:73761272-73761496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
91-305
               

               
Cow position:
               
chr1:29975521-29975733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
91-305
               

               
Cow position:
               
chr1:102291068-102291283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
91-308
               

               
Cow position:
               
chr1:31934586-31934376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
184, 101
               

               
Conread position:
               
91-308
               

               
Cow position:
               
chr1:92963474-92963263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
107, 61
               

               
Conread position:
               
91-313
               

               
Cow position:
               
chr1:46030282-46030497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
189, 99
               

               
Conread position:
               
94-249
               

               
Cow position:
               
chr1:80904843-80904689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
94-259
               

               
Cow position:
               
chr1:65103696-65103533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
94-304
               

               
Cow position:
               
chr1:6304788-6304996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
191, 98
               

               
Conread position:
               
94-308
               

               
Cow position:
               
chr1:44769033-44769248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
94-308
               

               
Cow position:
               
chr1:55135912-55135698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
94-308
               

               
Cow position:
               
chr1:87440543-87440333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
95-296
               

               
Cow position:
               
chr1:73196154-73196354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 159
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr1:41181920-41181718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
95-307
               

               
Cow position:
               
chr1:102647198-102647407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
151, 97
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr1:74947043-74947258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 5
               

               
Conread position:
               
95-313
               

               
Cow position:
               
chr1:42398116-42398337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
95-313
               

               
Cow position:
               
chr1:72034849-72035066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 79
               

               
Conread position:
               
96-295
               

               
Cow position:
               
chr1:91369935-91370131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
96-306
               

               
Cow position:
               
chr1:48444120-48444327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
113, 94
               

               
Conread position:
               
96-306
               

               
Cow position:
               
chr1:67305165-67305374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr1:51654498-51654275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr1:79278373-79278582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 31
               

               
Conread position:
               
97-308
               

               
Cow position:
               
chr1:52956323-52956118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr1:90864221-90864423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
100-254
               

               
Cow position:
               
chr1:41695670-41695518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
100-262
               

               
Cow position:
               
chr1:48606101-48605941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
100-265
               

               
Cow position:
               
chr1:55088985-55089145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 37
               

               
Conread position:
               
100-272
               

               
Cow position:
               
chr1:63138911-63138742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr1:88397775-88397941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
100-282
               

               
Cow position:
               
chr1:8374384-8374561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
100-283
               

               
Cow position:
               
chr1:40482342-40482513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr1:5539206-5539404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
181, 101
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr1:6294427-6294625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
6, 113
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr1:95637902-95637702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
183, 90
               

               
Conread position:
               
100-307
               

               
Cow position:
               
chr1:43357941-43358149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:31348367-31348576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 114
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:49077261-49077478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:52753090-52753301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 136
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:63390697-63390909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 92
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:63595984-63596191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:69127096-69127301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
183, 108
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr1:96304899-96305111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
100-310
               

               
Cow position:
               
chr1:648395-648186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
183, 89
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr1:26178741-26178951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 102
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr1:29451991-29451778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 89
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr1:95179024-95178812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
100-313
               

               
Cow position:
               
chr1:95654643-95654852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
71, 63
               

               
Conread position:
               
101-272
               

               
Cow position:
               
chr1:60856383-60856217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
101-279
               

               
Cow position:
               
chr1:101715014-101715190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
102-256
               

               
Cow position:
               
chr1:47790594-47790749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
102-306
               

               
Cow position:
               
chr1:1991350-1991554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
103-254
               

               
Cow position:
               
chr1:92965227-92965377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
104-307
               

               
Cow position:
               
chr1:89508617-89508422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
105-283
               

               
Cow position:
               
chr1:100400127-100400306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 86
               

               
Conread position:
               
105-300
               

               
Cow position:
               
chr1:100569221-100569024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
176, 84
               

               
Conread position:
               
105-301
               

               
Cow position:
               
chr1:32341144-32341333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
106-300
               

               
Cow position:
               
chr1:25387114-25386923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
106-308
               

               
Cow position:
               
chr1:85301481-85301283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
107-293
               

               
Cow position:
               
chr1:8984619-8984805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
107-308
               

               
Cow position:
               
chr1:54199316-54199519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr1:24235457-24235652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr1:57395874-57396067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
177, 80
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr1:60907439-60907235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
109-281
               

               
Cow position:
               
chr1:61723958-61724130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
109-307
               

               
Cow position:
               
chr1:24445567-24445761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr1:61742400-61742596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 26
               

               
Conread position:
               
110-306
               

               
Cow position:
               
chr1:60032539-60032732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr1:426870-427052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr1:24413509-24413308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr1:61564853-61564661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
111-279
               

               
Cow position:
               
chr1:10655540-10655378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
111-297
               

               
Cow position:
               
chr1:97755579-97755392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
111-308
               

               
Cow position:
               
chr1:83083067-83082867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 109
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr1:93228583-93228398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr1:44155308-44155114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
113-259
               

               
Cow position:
               
chr1:77620603-77620458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
114-308
               

               
Cow position:
               
chr1:82443399-82443592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 19
               

               
Conread position:
               
114-308
               

               
Cow position:
               
chr1:99136374-99136566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
115-308
               

               
Cow position:
               
chr1:100770697-100770886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 78
               

               
Conread position:
               
116-308
               

               
Cow position:
               
chr1:76470707-76470517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
160, 31
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chr1:98372685-98372497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
168, 75
               

               
Conread position:
               
118-296
               

               
Cow position:
               
chr1:57635514-57635338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
122-307
               

               
Cow position:
               
chr1:52329470-52329666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
122-313
               

               
Cow position:
               
chr1:71045803-71045614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
123-306
               

               
Cow position:
               
chr1:20544344-20544162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
124-308
               

               
Cow position:
               
chr1:45535753-45535570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
125-305
               

               
Cow position:
               
chr1:43447784-43447963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
126-308
               

               
Cow position:
               
chr1:99039311-99039488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
127-272
               

               
Cow position:
               
chr1:58438956-58439101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
127-306
               

               
Cow position:
               
chr1:90641079-90640895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr1:62920211-62920032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
64, 140
               

               
Conread position:
               
131-306
               

               
Cow position:
               
chr1:6961948-6961774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 62
               

               
Conread position:
               
133-283
               

               
Cow position:
               
chr1:73561610-73561757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
133-306
               

               
Cow position:
               
chr1:12870972-12871143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
46, 85
               

               
Conread position:
               
135-310
               

               
Cow position:
               
chr1:81471168-81470995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
137-308
               

               
Cow position:
               
chr1:22448548-22448722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
137-308
               

               
Cow position:
               
chr1:57263959-57264131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
141-308
               

               
Cow position:
               
chr1:51684836-51684665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
144-286
               

               
Cow position:
               
chr1:22466482-22466624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
95, 111
               

               
Conread position:
               
144-290
               

               
Cow position:
               
chr1:40069262-40069124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 54
               

               
Conread position:
               
146-283
               

               
Cow position:
               
chr1:666390-666255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
147-306
               

               
Cow position:
               
chr1:63905451-63905605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
147-308
               

               
Cow position:
               
chr1:5872944-5873107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr1:47009055-47008896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr1:50679257-50679421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
150-308
               

               
Cow position:
               
chr1:1403461-1403614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
151-308
               

               
Cow position:
               
chr1:71946351-71946507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
153-308
               

               
Cow position:
               
chr1:71818444-71818593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
154-308
               

               
Cow position:
               
chr1:12595885-12596039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-307
               

               
Cow position:
               
chr1:85826362-85826209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
155-308
               

               
Cow position:
               
chr1:64962652-64962804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
159-299
               

               
Cow position:
               
chr1:4294068-4293929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
161-308
               

               
Cow position:
               
chr1:75967440-75967296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
161-308
               

               
Cow position:
               
chr1:94404223-94404077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
164-308
               

               
Cow position:
               
chr1:41004354-41004498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
165-308
               

               
Cow position:
               
chr1:77099542-77099684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
177-306
               

               
Cow position:
               
chr1:31960222-31960092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
180-308
               

               
Cow position:
               
chr1:98563157-98563028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
184-308
               

               
Cow position:
               
chr1:3035002-3035128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
193-308
               

               
Cow position:
               
chr1:80311446-80311335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
193-310
               

               
Cow position:
               
chr1:80870096-80869978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
196-308
               

               
Cow position:
               
chr1:89083087-89082975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
199-305
               

               
Cow position:
               
chr1:50907422-50907528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.