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Cow genome map

           
Conread name:
           
rcsp04b_a24.y1
        

               
Conread position:
               
1-175
               

               
Cow position:
               
chr11:2900574-2900749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr11:29699548-29699768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 157
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr11:72292700-72292464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:31410741-31410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
195, 22
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr11:17721662-17721885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
198, 20
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr11:18910745-18910964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr11:48086057-48085829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr11:8437548-8437782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:80564436-80564198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr11:30494130-30493893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr11:17036393-17036639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr11:42067003-42066738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
1-272
               

               
Cow position:
               
chr11:75285617-75285891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr11:40608454-40608722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 23
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr11:53463081-53462809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr11:47772243-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 59
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr11:81135030-81135306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-291
               

               
Cow position:
               
chr11:63998951-63999233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 40
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr11:6399925-6400219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr11:74316845-74316564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr11:47755241-47755534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr11:32254077-32254371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
279, 26
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr11:5201506-5201805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr11:34121337-34121045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr11:35213030-35213316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr11:56187746-56187464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr11:35347612-35347911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
267, 40
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr11:20761991-20761689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 114
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr11:38670829-38670525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
65, 41
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:377497-377805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:1625083-1625377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
198, 29
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:2907392-2907678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
218, 22
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:11558310-11558008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:11647236-11646910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
22, 134
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:20238815-20238512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 24
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:30192320-30192013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 26
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:34646734-34646432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:35580400-35580098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 22
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:42016499-42016795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
279, 26
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:45646454-45646754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:48296167-48295873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 22
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:50152674-50152975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:65157266-65157571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
144, 35
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:65762445-65762759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:80923184-80923483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 23
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr11:87155660-87155358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
287, 44
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr11:55053006-55052726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr11:6245460-6245160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 79
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr11:41980063-41980215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
2-179
               

               
Cow position:
               
chr11:15382357-15382535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chr11:81763016-81762811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
2-225
               

               
Cow position:
               
chr11:36920436-36920656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr11:36914427-36914655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr11:32398779-32398546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
2-249
               

               
Cow position:
               
chr11:55744607-55744371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr11:46999124-46998877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 59
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr11:31875232-31874982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr11:8462143-8461893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-274
               

               
Cow position:
               
chr11:30708643-30708379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
71, 40
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr11:3703090-3702821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
186, 39
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chr11:59024215-59024484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr11:18425101-18425372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
2-291
               

               
Cow position:
               
chr11:83398045-83397763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
2-295
               

               
Cow position:
               
chr11:68913281-68912995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
274, 40
               

               
Conread position:
               
2-296
               

               
Cow position:
               
chr11:63435660-63435370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
2-297
               

               
Cow position:
               
chr11:68112121-68112411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
152, 41
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr11:17493621-17493327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr11:4207454-4207157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr11:4732482-4732186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
183, 40
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chr11:80556356-80556065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 28
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr11:36182830-36182529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
2-306
               

               
Cow position:
               
chr11:40792555-40792862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr11:83066630-83066336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
194, 34
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:11125806-11125503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:27248626-27248333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 28
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:27404933-27405225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:33286817-33287112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
279, 40
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:36981704-36981405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
279, 42
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:53778758-53778455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
278, 46
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:55334057-55333752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
38, 193
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:68909715-68910010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
200, 31
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:76890185-76889889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:77750623-77750931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:81300483-81300769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr11:82940488-82940781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
189, 24
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr11:21844001-21844296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
204, 22
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr11:17860015-17860319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
277, 68
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr11:84385499-84385802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
269, 25
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr11:33414375-33414103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr11:29786357-29786544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
4-283
               

               
Cow position:
               
chr11:66572356-66572635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
191, 40
               

               
Conread position:
               
4-297
               

               
Cow position:
               
chr11:77745113-77745406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
192, 40
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr11:34144783-34145071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr11:36112554-36112263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
223, 35
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr11:15772577-15772879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
216, 23
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr11:26143958-26144258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
200, 30
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr11:30209685-30209980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr11:71492726-71493017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
223, 16
               

               
Conread position:
               
4-308
               

               
Cow position:
               
chr11:75479886-75480188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 38
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr11:13500150-13499846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
200, 19
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr11:261121-261388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
18, 192
               

               
Conread position:
               
7-262
               

               
Cow position:
               
chr11:6835668-6835417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
200, 35
               

               
Conread position:
               
7-308
               

               
Cow position:
               
chr11:23586774-23586478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr11:35926776-35926994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr11:9463969-9463672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 45
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr11:25620258-25620556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr11:38236385-38236084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
8-313
               

               
Cow position:
               
chr11:72375534-72375850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chr11:7590320-7590034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
12-300
               

               
Cow position:
               
chr11:35684365-35684646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 170
               

               
Conread position:
               
12-307
               

               
Cow position:
               
chr11:6202576-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
63, 40
               

               
Conread position:
               
12-308
               

               
Cow position:
               
chr11:35153693-35153984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
16-236
               

               
Cow position:
               
chr11:4652845-4653065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
181, 33
               

               
Conread position:
               
16-308
               

               
Cow position:
               
chr11:3234203-3233924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
264, 33
               

               
Conread position:
               
16-313
               

               
Cow position:
               
chr11:41811787-41812074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
265, 33
               

               
Conread position:
               
19-272
               

               
Cow position:
               
chr11:54334453-54334210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
19-299
               

               
Cow position:
               
chr11:70836251-70836521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr11:28644214-28643932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 34
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr11:952396-952112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
19-308
               

               
Cow position:
               
chr11:21894034-21894313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
265, 103
               

               
Conread position:
               
19-311
               

               
Cow position:
               
chr11:48650099-48649817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr11:17321776-17321503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr11:59702613-59702327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 30
               

               
Conread position:
               
22-317
               

               
Cow position:
               
chr11:35775465-35775170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
16, 165
               

               
Conread position:
               
23-227
               

               
Cow position:
               
chr11:18785754-18785950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
23-272
               

               
Cow position:
               
chr11:66424759-66425004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
24-274
               

               
Cow position:
               
chr11:70756598-70756356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
24-305
               

               
Cow position:
               
chr11:14470485-14470213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
252, 25
               

               
Conread position:
               
24-308
               

               
Cow position:
               
chr11:8988112-8988387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
216, 25
               

               
Conread position:
               
25-305
               

               
Cow position:
               
chr11:25387188-25386907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
26-308
               

               
Cow position:
               
chr11:83926160-83925886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
254, 23
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chr11:28168302-28168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chr11:79018938-79019140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
31, 192
               

               
Conread position:
               
27-260
               

               
Cow position:
               
chr11:26845474-26845706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
31, 37
               

               
Conread position:
               
27-308
               

               
Cow position:
               
chr11:2092462-2092180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
24, 132
               

               
Conread position:
               
28-279
               

               
Cow position:
               
chr11:70114588-70114341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
160, 21
               

               
Conread position:
               
28-295
               

               
Cow position:
               
chr11:40573214-40573479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
28-295
               

               
Cow position:
               
chr11:49057507-49057256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
28-300
               

               
Cow position:
               
chr11:44032131-44031851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 220
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr11:8544900-8545172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr11:45283044-45282768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
96, 24
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr11:61958627-61958906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
28-308
               

               
Cow position:
               
chr11:73924445-73924719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr11:56518195-56518477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
164, 24
               

               
Conread position:
               
29-173
               

               
Cow position:
               
chr11:63165532-63165673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
29-245
               

               
Cow position:
               
chr11:17676258-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
29-251
               

               
Cow position:
               
chr11:46922770-46922999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
29-269
               

               
Cow position:
               
chr11:26274848-26275078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr11:67615132-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
175, 26
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr11:69076025-69075755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 20
               

               
Conread position:
               
29-308
               

               
Cow position:
               
chr11:52380755-52381033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
29-308
               

               
Cow position:
               
chr11:67747394-67747125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
29-310
               

               
Cow position:
               
chr11:71868484-71868770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 164
               

               
Conread position:
               
31-301
               

               
Cow position:
               
chr11:18852024-18851766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
31-305
               

               
Cow position:
               
chr11:44222997-44222734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
172, 18
               

               
Conread position:
               
31-308
               

               
Cow position:
               
chr11:77758645-77758917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 123
               

               
Conread position:
               
32-295
               

               
Cow position:
               
chr11:23407576-23407315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
167, 17
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr11:30638836-30639103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
248, 27
               

               
Conread position:
               
32-306
               

               
Cow position:
               
chr11:83687318-83687588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
32-307
               

               
Cow position:
               
chr11:66188203-66188479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
163, 40
               

               
Conread position:
               
32-308
               

               
Cow position:
               
chr11:23232406-23232673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 27
               

               
Conread position:
               
32-308
               

               
Cow position:
               
chr11:32693369-32693631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
32-312
               

               
Cow position:
               
chr11:15017172-15016878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
33-235
               

               
Cow position:
               
chr11:35803251-35803047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 102
               

               
Conread position:
               
33-305
               

               
Cow position:
               
chr11:40258298-40258568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
40, 30
               

               
Conread position:
               
34-250
               

               
Cow position:
               
chr11:39060489-39060702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 58
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr11:29946803-29947087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
156, 18
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr11:62239858-62239587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
34-308
               

               
Cow position:
               
chr11:83230291-83230550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
35-306
               

               
Cow position:
               
chr11:41288-41026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
36-237
               

               
Cow position:
               
chr11:47725004-47724814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
36-247
               

               
Cow position:
               
chr11:42159946-42160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
149, 94
               

               
Conread position:
               
36-274
               

               
Cow position:
               
chr11:485519-485756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
160, 11
               

               
Conread position:
               
36-283
               

               
Cow position:
               
chr11:52690410-52690657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
36-306
               

               
Cow position:
               
chr11:39115605-39115336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
22, 13
               

               
Conread position:
               
36-306
               

               
Cow position:
               
chr11:45435193-45434929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 167
               

               
Conread position:
               
36-306
               

               
Cow position:
               
chr11:48496481-48496744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
24, 161
               

               
Conread position:
               
36-308
               

               
Cow position:
               
chr11:40818516-40818799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
37-302
               

               
Cow position:
               
chr11:14308747-14308487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 15
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr11:2917480-2917742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
38-283
               

               
Cow position:
               
chr11:48660044-48659797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
38-297
               

               
Cow position:
               
chr11:18706715-18706966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chr11:43898248-43897983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
38-306
               

               
Cow position:
               
chr11:76369411-76369678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
37, 43
               

               
Conread position:
               
40-288
               

               
Cow position:
               
chr11:21497629-21497382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
188, 152
               

               
Conread position:
               
40-300
               

               
Cow position:
               
chr11:41985942-41986196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
236, 12
               

               
Conread position:
               
41-272
               

               
Cow position:
               
chr11:33345552-33345320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
42-188
               

               
Cow position:
               
chr11:897776-897632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
42-207
               

               
Cow position:
               
chr11:34413238-34413398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
42-295
               

               
Cow position:
               
chr11:62789233-62788981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 10
               

               
Conread position:
               
42-306
               

               
Cow position:
               
chr11:39499459-39499201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 10
               

               
Conread position:
               
42-306
               

               
Cow position:
               
chr11:47545238-47544973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr11:5567-5308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr11:2575800-2576063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 16
               

               
Conread position:
               
42-308
               

               
Cow position:
               
chr11:17661185-17660935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
43-220
               

               
Cow position:
               
chr11:30484022-30483845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
43-290
               

               
Cow position:
               
chr11:65767301-65767056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
43-310
               

               
Cow position:
               
chr11:23271900-23272161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
87, 92
               

               
Conread position:
               
44-234
               

               
Cow position:
               
chr11:4637069-4637259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
44-279
               

               
Cow position:
               
chr11:67614819-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr11:1849073-1849321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr11:52297118-52297380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
45-232
               

               
Cow position:
               
chr11:53279613-53279798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
150, 85
               

               
Conread position:
               
45-249
               

               
Cow position:
               
chr11:22499265-22499464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
46-298
               

               
Cow position:
               
chr11:77118798-77118559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
208, 14
               

               
Conread position:
               
46-309
               

               
Cow position:
               
chr11:56654658-56654388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
47-229
               

               
Cow position:
               
chr11:82740609-82740427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr11:1157742-1157485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr11:16342130-16342399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 247
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chr11:66041375-66041111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
49-231
               

               
Cow position:
               
chr11:30355156-30354975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 128
               

               
Conread position:
               
49-236
               

               
Cow position:
               
chr11:19586557-19586367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
49-273
               

               
Cow position:
               
chr11:6194303-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
49-288
               

               
Cow position:
               
chr11:69978068-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
49-290
               

               
Cow position:
               
chr11:16540960-16540721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
49-306
               

               
Cow position:
               
chr11:63482332-63482584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:6233782-6234039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
231, 147
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:21728183-21728428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
96, 45
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:44636656-44636917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:58588442-58588188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:59873026-59872772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 71
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:61454419-61454691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
138, 84
               

               
Conread position:
               
49-308
               

               
Cow position:
               
chr11:75874658-75874911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
49-315
               

               
Cow position:
               
chr11:71390468-71390730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 49
               

               
Conread position:
               
50-296
               

               
Cow position:
               
chr11:21852205-21852450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
152, 198
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr11:28993641-28993889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
50-308
               

               
Cow position:
               
chr11:42043900-42044147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
222, 28
               

               
Conread position:
               
51-311
               

               
Cow position:
               
chr11:64090002-64090246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
52-214
               

               
Cow position:
               
chr11:19606672-19606512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
52-254
               

               
Cow position:
               
chr11:71341370-71341571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
52-255
               

               
Cow position:
               
chr11:14466392-14466595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-256
               

               
Cow position:
               
chr11:6194491-6194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
52-256
               

               
Cow position:
               
chr11:83033145-83033344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
52-274
               

               
Cow position:
               
chr11:47837414-47837188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 102
               

               
Conread position:
               
52-278
               

               
Cow position:
               
chr11:41293723-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
196, 137
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr11:64867926-64868145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
175, 138
               

               
Conread position:
               
52-283
               

               
Cow position:
               
chr11:39462718-39462495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
52-285
               

               
Cow position:
               
chr11:71807472-71807707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 104
               

               
Conread position:
               
52-297
               

               
Cow position:
               
chr11:62663140-62663369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
52-297
               

               
Cow position:
               
chr11:86720323-86720560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
18, 43
               

               
Conread position:
               
52-301
               

               
Cow position:
               
chr11:70278018-70278261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
231, 119
               

               
Conread position:
               
52-305
               

               
Cow position:
               
chr11:2925206-2925444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:9270632-9270885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:17227550-17227803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
135, 81
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:18572895-18572644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:36658729-36658975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:48544535-48544279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:51729381-51729131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:53553310-53553079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr11:62150799-62151042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr11:68206747-68206997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 122
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr11:76114737-76114496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr11:83043268-83043522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:1362373-1362637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:2084238-2083977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:3393115-3393368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
151, 53
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:15285520-15285774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
232, 186
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:20602321-20602068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:23137959-23138221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:27747018-27746765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 149
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:30955095-30954839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 149
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:33311072-33310810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
57, 173
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:34113360-34113106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 131
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:40478759-40479014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
236, 7
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:41272232-41271982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 105
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:45631671-45631921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:48272295-48272038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:49149144-49148877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
71, 154
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:60143206-60143458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:64905092-64904837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:65607594-65607850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 143
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:70086427-70086165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 52
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:71501038-71501295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
228, 11
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:73512349-73512591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
228, 11
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:77128755-77128500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
141, 192
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:77319509-77319253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
52-308
               

               
Cow position:
               
chr11:80530453-80530206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
233, 67
               

               
Conread position:
               
52-310
               

               
Cow position:
               
chr11:36238872-36238622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chr11:19500697-19500942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chr11:77705845-77705598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
139, 42
               

               
Conread position:
               
52-313
               

               
Cow position:
               
chr11:17278581-17278830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
229, 84
               

               
Conread position:
               
54-182
               

               
Cow position:
               
chr11:18915119-18914990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
54-269
               

               
Cow position:
               
chr11:249389-249605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
54-274
               

               
Cow position:
               
chr11:27719237-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
54-294
               

               
Cow position:
               
chr11:38639204-38638974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 98
               

               
Conread position:
               
54-295
               

               
Cow position:
               
chr11:49934638-49934884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
54-298
               

               
Cow position:
               
chr11:63469968-63469728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
54-299
               

               
Cow position:
               
chr11:49872795-49873038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
212, 76
               

               
Conread position:
               
54-306
               

               
Cow position:
               
chr11:46580446-46580198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
54-306
               

               
Cow position:
               
chr11:55494772-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
54-306
               

               
Cow position:
               
chr11:67600877-67600625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
54-307
               

               
Cow position:
               
chr11:13061142-13061388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 133
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr11:24602063-24601814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
44, 144
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr11:64044326-64044082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr11:21438300-21438056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr11:33341053-33341305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 0
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr11:44036811-44036559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
210, 69
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr11:45897957-45898212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
15, 142
               

               
Conread position:
               
56-179
               

               
Cow position:
               
chr11:65803779-65803903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
56-282
               

               
Cow position:
               
chr11:52983765-52983547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
57-205
               

               
Cow position:
               
chr11:18447402-18447548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
57-235
               

               
Cow position:
               
chr11:33409172-33409347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
57-268
               

               
Cow position:
               
chr11:375549-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
57-272
               

               
Cow position:
               
chr11:43360694-43360906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
131, 70
               

               
Conread position:
               
57-300
               

               
Cow position:
               
chr11:70251008-70250774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
57-307
               

               
Cow position:
               
chr11:29960385-29960147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr11:10213479-10213721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr11:30830524-30830775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr11:35873913-35874151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
57-308
               

               
Cow position:
               
chr11:47899358-47899120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
58-307
               

               
Cow position:
               
chr11:69119382-69119144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
58-308
               

               
Cow position:
               
chr11:34829697-34829939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 72
               

               
Conread position:
               
58-308
               

               
Cow position:
               
chr11:42296531-42296777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
59-274
               

               
Cow position:
               
chr11:83032768-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
59-275
               

               
Cow position:
               
chr11:80537574-80537360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 14
               

               
Conread position:
               
59-298
               

               
Cow position:
               
chr11:67246873-67246643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
59-305
               

               
Cow position:
               
chr11:49153036-49152795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 68
               

               
Conread position:
               
59-306
               

               
Cow position:
               
chr11:63433972-63434213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
59-306
               

               
Cow position:
               
chr11:81162345-81162590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
203, 0
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:16906963-16907202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:33348100-33348345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
221, 19
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:36799220-36799462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
221, 19
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:63917389-63917624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:64638438-64638693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
136, 78
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:69810991-69810747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 177
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:70609885-70609626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
95, 53
               

               
Conread position:
               
59-308
               

               
Cow position:
               
chr11:73353972-73354214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
227, 132
               

               
Conread position:
               
59-310
               

               
Cow position:
               
chr11:18698967-18698716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 134
               

               
Conread position:
               
59-311
               

               
Cow position:
               
chr11:3833276-3833514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
139, 35
               

               
Conread position:
               
60-246
               

               
Cow position:
               
chr11:64406315-64406128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
60-259
               

               
Cow position:
               
chr11:8428598-8428400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
60-289
               

               
Cow position:
               
chr11:5211655-5211879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 13
               

               
Conread position:
               
60-303
               

               
Cow position:
               
chr11:34963156-34962910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
60-306
               

               
Cow position:
               
chr11:23128453-23128700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr11:8525028-8525269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
60-307
               

               
Cow position:
               
chr11:50778454-50778215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr11:11232369-11232614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
146, 70
               

               
Conread position:
               
61-296
               

               
Cow position:
               
chr11:11469562-11469782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
61-308
               

               
Cow position:
               
chr11:8147813-8148056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
62-259
               

               
Cow position:
               
chr11:55761953-55761760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
62-308
               

               
Cow position:
               
chr11:28691670-28691915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
62-308
               

               
Cow position:
               
chr11:44642207-44642446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
62-313
               

               
Cow position:
               
chr11:5031691-5031939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
218, 75
               

               
Conread position:
               
63-269
               

               
Cow position:
               
chr11:84490416-84490610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
63-306
               

               
Cow position:
               
chr11:63847930-63847692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
63-307
               

               
Cow position:
               
chr11:4662963-4663204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
63-307
               

               
Cow position:
               
chr11:68904993-68905232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr11:259088-259332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
146, 121
               

               
Conread position:
               
64-235
               

               
Cow position:
               
chr11:70620128-70619955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr11:43430375-43430610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
68-247
               

               
Cow position:
               
chr11:81159958-81159781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
68-279
               

               
Cow position:
               
chr11:66733907-66733707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
68-294
               

               
Cow position:
               
chr11:32750188-32749966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
212, 9
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr11:45872233-45872477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
68-313
               

               
Cow position:
               
chr11:61203243-61203001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
215, 9
               

               
Conread position:
               
68-317
               

               
Cow position:
               
chr11:80756703-80756952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
141, 9
               

               
Conread position:
               
69-283
               

               
Cow position:
               
chr11:62880554-62880758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
72-283
               

               
Cow position:
               
chr11:23251518-23251727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
73-198
               

               
Cow position:
               
chr11:36328961-36329086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
75-301
               

               
Cow position:
               
chr11:82796217-82796438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
77-283
               

               
Cow position:
               
chr11:31337457-31337248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
120, 139
               

               
Conread position:
               
78-256
               

               
Cow position:
               
chr11:75965583-75965757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
78-308
               

               
Cow position:
               
chr11:10620259-10620482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 153
               

               
Conread position:
               
79-229
               

               
Cow position:
               
chr11:36914659-36914801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
79-274
               

               
Cow position:
               
chr11:80787838-80788034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
5, 112
               

               
Conread position:
               
79-279
               

               
Cow position:
               
chr11:7497579-7497773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
83-308
               

               
Cow position:
               
chr11:3720317-3720095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
198, 47
               

               
Conread position:
               
84-308
               

               
Cow position:
               
chr11:38874339-38874563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
196, 118
               

               
Conread position:
               
84-308
               

               
Cow position:
               
chr11:70273369-70273141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 105
               

               
Conread position:
               
84-313
               

               
Cow position:
               
chr11:22977812-22978029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
86-274
               

               
Cow position:
               
chr11:16261964-16262153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
86-305
               

               
Cow position:
               
chr11:36286756-36286539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
194, 114
               

               
Conread position:
               
86-307
               

               
Cow position:
               
chr11:42359175-42358961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr11:9221671-9221883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
113, 66
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr11:71009189-71008976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
199, 34
               

               
Conread position:
               
87-251
               

               
Cow position:
               
chr11:18588526-18588688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
87-283
               

               
Cow position:
               
chr11:21399022-21398831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 105
               

               
Conread position:
               
89-307
               

               
Cow position:
               
chr11:4323416-4323197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
113, 103
               

               
Conread position:
               
89-307
               

               
Cow position:
               
chr11:34032145-34032361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
191, 35
               

               
Conread position:
               
89-308
               

               
Cow position:
               
chr11:85723755-85723540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
193, 101
               

               
Conread position:
               
89-313
               

               
Cow position:
               
chr11:65409096-65409319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
90-303
               

               
Cow position:
               
chr11:44575688-44575887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 100
               

               
Conread position:
               
91-239
               

               
Cow position:
               
chr11:54218770-54218628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
91-267
               

               
Cow position:
               
chr11:48429166-48428988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
91-283
               

               
Cow position:
               
chr11:80761322-80761513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
91-308
               

               
Cow position:
               
chr11:63156862-63157069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
173, 79
               

               
Conread position:
               
91-308
               

               
Cow position:
               
chr11:65444787-65445007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
93-308
               

               
Cow position:
               
chr11:30120608-30120825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
94-308
               

               
Cow position:
               
chr11:53512135-53511922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
95-272
               

               
Cow position:
               
chr11:7385491-7385306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
84, 102
               

               
Conread position:
               
95-296
               

               
Cow position:
               
chr11:30911952-30912137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
95-305
               

               
Cow position:
               
chr11:18243890-18244095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
190, 38
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:18340989-18341195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:30764542-30764323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:33753857-33754064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
189, 51
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:41175897-41176109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:62490490-62490274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 183
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr11:70483800-70484018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 88
               

               
Conread position:
               
96-254
               

               
Cow position:
               
chr11:11044982-11045139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 42
               

               
Conread position:
               
96-306
               

               
Cow position:
               
chr11:48697495-48697289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
179, 40
               

               
Conread position:
               
99-283
               

               
Cow position:
               
chr11:39118805-39118618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
100-262
               

               
Cow position:
               
chr11:76653066-76652905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr11:31525925-31525744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr11:42002901-42003069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr11:81167981-81168157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
100-274
               

               
Cow position:
               
chr11:81282004-81281822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
100-279
               

               
Cow position:
               
chr11:30721145-30720967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
110, 141
               

               
Conread position:
               
100-281
               

               
Cow position:
               
chr11:81913676-81913850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
100-283
               

               
Cow position:
               
chr11:8496079-8495908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
100-295
               

               
Cow position:
               
chr11:83357441-83357247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
100-297
               

               
Cow position:
               
chr11:56728996-56728801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 97
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chr11:57724778-57724977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
182, 89
               

               
Conread position:
               
100-304
               

               
Cow position:
               
chr11:3726335-3726130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
181, 92
               

               
Conread position:
               
100-306
               

               
Cow position:
               
chr11:4436366-4436168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
180, 79
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:13191281-13191063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 118
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:17495695-17495903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
99, 140
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:20684525-20684736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
99, 90
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:26483758-26483554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
176, 41
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:29916588-29916373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
90, 166
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:32378234-32378027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:33293732-33293947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 92
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:62155685-62155465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
100-308
               

               
Cow position:
               
chr11:79728621-79728829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
101-297
               

               
Cow position:
               
chr11:2788439-2788231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
101-308
               

               
Cow position:
               
chr11:7458236-7458446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
101-308
               

               
Cow position:
               
chr11:30597039-30596827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
101-308
               

               
Cow position:
               
chr11:33349655-33349858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
180, 89
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr11:1095174-1095005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
102-308
               

               
Cow position:
               
chr11:3780373-3780581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 162
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr11:15504157-15503939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
104-232
               

               
Cow position:
               
chr11:1779286-1779413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
104-275
               

               
Cow position:
               
chr11:83000487-83000661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
104-279
               

               
Cow position:
               
chr11:7460572-7460745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
104-308
               

               
Cow position:
               
chr11:15632511-15632716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
141, 131
               

               
Conread position:
               
106-308
               

               
Cow position:
               
chr11:22931930-22932134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
80, 144
               

               
Conread position:
               
106-308
               

               
Cow position:
               
chr11:42792932-42793132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
107-308
               

               
Cow position:
               
chr11:2811690-2811888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
108-305
               

               
Cow position:
               
chr11:57170791-57170986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr11:955407-955206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
108-308
               

               
Cow position:
               
chr11:48041994-48042199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 96
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr11:56348985-56349175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
176, 45
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chr11:67136393-67136599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
110-283
               

               
Cow position:
               
chr11:36114193-36114030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr11:8339369-8339565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 93
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr11:27386302-27386505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
110-308
               

               
Cow position:
               
chr11:65431091-65430901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
111-311
               

               
Cow position:
               
chr11:18591398-18591594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr11:10076803-10076606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 84
               

               
Conread position:
               
114-304
               

               
Cow position:
               
chr11:85986140-85986326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
114-308
               

               
Cow position:
               
chr11:75355653-75355451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
42, 129
               

               
Conread position:
               
115-306
               

               
Cow position:
               
chr11:21427961-21428151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
165, 86
               

               
Conread position:
               
115-308
               

               
Cow position:
               
chr11:6154440-6154255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
121-312
               

               
Cow position:
               
chr11:2309899-2309709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 82
               

               
Conread position:
               
122-308
               

               
Cow position:
               
chr11:81174909-81174730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
124-302
               

               
Cow position:
               
chr11:75918356-75918189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
124-307
               

               
Cow position:
               
chr11:24585204-24585020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
125-295
               

               
Cow position:
               
chr11:33824866-33825037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
127-306
               

               
Cow position:
               
chr11:16251224-16251404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
127-306
               

               
Cow position:
               
chr11:50197413-50197592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 68
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr11:83196517-83196339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
130-308
               

               
Cow position:
               
chr11:62979507-62979321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
133-313
               

               
Cow position:
               
chr11:41134052-41134230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
147, 59
               

               
Conread position:
               
134-297
               

               
Cow position:
               
chr11:51626977-51626814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
151, 67
               

               
Conread position:
               
135-308
               

               
Cow position:
               
chr11:4412010-4412174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
136-304
               

               
Cow position:
               
chr11:65435865-65435698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 43
               

               
Conread position:
               
137-307
               

               
Cow position:
               
chr11:48932577-48932743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
137-308
               

               
Cow position:
               
chr11:33468720-33468552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
139, 55
               

               
Conread position:
               
138-307
               

               
Cow position:
               
chr11:36301068-36301236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
138-308
               

               
Cow position:
               
chr11:25320066-25319894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
145-308
               

               
Cow position:
               
chr11:77208044-77207888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
147-308
               

               
Cow position:
               
chr11:59155877-59156038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
148-307
               

               
Cow position:
               
chr11:47586351-47586507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr11:8105784-8105622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr11:62808653-62808809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
132, 50
               

               
Conread position:
               
148-308
               

               
Cow position:
               
chr11:63516826-63516667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
155-307
               

               
Cow position:
               
chr11:81614648-81614797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
157-306
               

               
Cow position:
               
chr11:77241360-77241214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
119, 44
               

               
Conread position:
               
163-308
               

               
Cow position:
               
chr11:9837114-9837261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
165-304
               

               
Cow position:
               
chr11:70740996-70741131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
165-306
               

               
Cow position:
               
chr11:43914197-43914054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
165-308
               

               
Cow position:
               
chr11:47851008-47850867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 41
               

               
Conread position:
               
165-308
               

               
Cow position:
               
chr11:62749774-62749907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
176-306
               

               
Cow position:
               
chr11:63520745-63520615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
184-308
               

               
Cow position:
               
chr11:25165407-25165283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
198-308
               

               
Cow position:
               
chr11:19508246-19508136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.