Non-Coding RNA Search

Cow genome map


           Conread name:
           rcsp04b_a24.y1
        

               Conread position:
               1-142
               

               Cow position:
               chrX:31983394-31983536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               1-188
               

               Cow position:
               chrX:10252018-10252195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               146, 26
               

               Conread position:
               1-227
               

               Cow position:
               chrX:28940428-28940212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               1-234
               

               Cow position:
               chrX:19394739-19394511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               58, 21
               

               Conread position:
               1-238
               

               Cow position:
               chrX:6599590-6599831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               21, 55
               

               Conread position:
               1-247
               

               Cow position:
               chrX:35986004-35985764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               1-272
               

               Cow position:
               chrX:22115131-22115396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               261, 48
               

               Conread position:
               1-286
               

               Cow position:
               chrX:1466344-1466068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               1-289
               

               Cow position:
               chrX:12095587-12095870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               153, 26
               

               Conread position:
               1-296
               

               Cow position:
               chrX:28013254-28013551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               153, 59
               

               Conread position:
               1-297
               

               Cow position:
               chrX:27302061-27301766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               129, 22
               

               Conread position:
               1-298
               

               Cow position:
               chrX:17795164-17794878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               187, 22
               

               Conread position:
               1-300
               

               Cow position:
               chrX:8869220-8869509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 22
               

               Conread position:
               1-301
               

               Cow position:
               chrX:29230191-29229902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 44
               

               Conread position:
               1-306
               

               Cow position:
               chrX:6414222-6413931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 23
               

               Conread position:
               1-306
               

               Cow position:
               chrX:21672746-21672442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               139, 21
               

               Conread position:
               1-306
               

               Cow position:
               chrX:30337770-30338055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               1-307
               

               Cow position:
               chrX:42380926-42381216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               280, 37
               

               Conread position:
               1-308
               

               Cow position:
               chrX:5118314-5118617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 29
               

               Conread position:
               1-308
               

               Cow position:
               chrX:13647600-13647900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               1-308
               

               Cow position:
               chrX:14275564-14275849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               195, 21
               

               Conread position:
               1-308
               

               Cow position:
               chrX:18204276-18204578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               130, 46
               

               Conread position:
               1-308
               

               Cow position:
               chrX:22482505-22482801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               148, 41
               

               Conread position:
               1-308
               

               Cow position:
               chrX:32821224-32820913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 150
               

               Conread position:
               1-308
               

               Cow position:
               chrX:34412032-34411729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 21
               

               Conread position:
               1-308
               

               Cow position:
               chrX:35273556-35273241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               231
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               61, 25
               

               Conread position:
               1-308
               

               Cow position:
               chrX:35543068-35542780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               231, 31
               

               Conread position:
               1-308
               

               Cow position:
               chrX:43115333-43115036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               296, 23
               

               Conread position:
               1-310
               

               Cow position:
               chrX:24365638-24365945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               198, 23
               

               Conread position:
               1-313
               

               Cow position:
               chrX:34554908-34554604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               277, 34
               

               Conread position:
               2-185
               

               Cow position:
               chrX:38301997-38301815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               129
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               45, 51
               

               Conread position:
               2-187
               

               Cow position:
               chrX:32942892-32943072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               2-189
               

               Cow position:
               chrX:39180050-39180231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-200
               

               Cow position:
               chrX:30672201-30672405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 41
               

               Conread position:
               2-210
               

               Cow position:
               chrX:42449830-42450033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               200, 40
               

               Conread position:
               2-233
               

               Cow position:
               chrX:18964642-18964865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               2-256
               

               Cow position:
               chrX:13147163-13146918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               174
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-258
               

               Cow position:
               chrX:2674774-2675022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               147, 40
               

               Conread position:
               2-266
               

               Cow position:
               chrX:48004029-48003774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-272
               

               Cow position:
               chrX:25815716-25815985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               184, 50
               

               Conread position:
               2-273
               

               Cow position:
               chrX:39220269-39220000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               198
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               2-274
               

               Cow position:
               chrX:17231920-17231653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               2-274
               

               Cow position:
               chrX:27261374-27261107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               128, 37
               

               Conread position:
               2-279
               

               Cow position:
               chrX:40680798-40680525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               204, 40
               

               Conread position:
               2-283
               

               Cow position:
               chrX:20168741-20168468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-286
               

               Cow position:
               chrX:48071345-48071068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-290
               

               Cow position:
               chrX:9251980-9252256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               2-295
               

               Cow position:
               chrX:31489704-31489420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               202, 40
               

               Conread position:
               2-297
               

               Cow position:
               chrX:31948751-31949040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               279, 40
               

               Conread position:
               2-297
               

               Cow position:
               chrX:40826567-40826858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               279, 51
               

               Conread position:
               2-299
               

               Cow position:
               chrX:12290901-12290620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               283, 37
               

               Conread position:
               2-302
               

               Cow position:
               chrX:47344482-47344186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               189, 47
               

               Conread position:
               2-304
               

               Cow position:
               chrX:17949309-17949601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               95, 40
               

               Conread position:
               2-305
               

               Cow position:
               chrX:6407727-6407437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               197, 39
               

               Conread position:
               2-306
               

               Cow position:
               chrX:4515871-4515571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               68, 21
               

               Conread position:
               2-306
               

               Cow position:
               chrX:9635006-9635294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               2-306
               

               Cow position:
               chrX:10831298-10831606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               218
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               99, 68
               

               Conread position:
               2-306
               

               Cow position:
               chrX:12309202-12309498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               274, 40
               

               Conread position:
               2-306
               

               Cow position:
               chrX:36976135-36975836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               167, 28
               

               Conread position:
               2-306
               

               Cow position:
               chrX:46032543-46032837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               94, 21
               

               Conread position:
               2-308
               

               Cow position:
               chrX:4399301-4399014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               146, 40
               

               Conread position:
               2-308
               

               Cow position:
               chrX:4632671-4632967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               76, 43
               

               Conread position:
               2-308
               

               Cow position:
               chrX:8731277-8730971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               189, 42
               

               Conread position:
               2-308
               

               Cow position:
               chrX:11633865-11633563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               216
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               282, 22
               

               Conread position:
               2-308
               

               Cow position:
               chrX:16416686-16416395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               278, 41
               

               Conread position:
               2-308
               

               Cow position:
               chrX:20339710-20340003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               220
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               2-308
               

               Cow position:
               chrX:21593475-21593172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               47, 25
               

               Conread position:
               2-308
               

               Cow position:
               chrX:27175182-27174880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               212, 40
               

               Conread position:
               2-308
               

               Cow position:
               chrX:30962692-30962989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               274, 42
               

               Conread position:
               2-308
               

               Cow position:
               chrX:31252591-31252303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-308
               

               Cow position:
               chrX:31294386-31294672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               2-308
               

               Cow position:
               chrX:34503111-34502807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 60
               

               Conread position:
               2-308
               

               Cow position:
               chrX:34543968-34543671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               200, 42
               

               Conread position:
               2-308
               

               Cow position:
               chrX:38935462-38935170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               279, 40
               

               Conread position:
               2-308
               

               Cow position:
               chrX:40035256-40035557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 39
               

               Conread position:
               2-308
               

               Cow position:
               chrX:40685146-40685446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 25
               

               Conread position:
               2-308
               

               Cow position:
               chrX:41027343-41027042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               219
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               2-308
               

               Cow position:
               chrX:42246998-42247300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               217
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               193, 25
               

               Conread position:
               2-310
               

               Cow position:
               chrX:7351487-7351182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               56, 78
               

               Conread position:
               2-311
               

               Cow position:
               chrX:152088-151784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               2-313
               

               Cow position:
               chrX:23563607-23563913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               278, 40
               

               Conread position:
               2-313
               

               Cow position:
               chrX:34565468-34565163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               223
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               197, 21
               

               Conread position:
               2-314
               

               Cow position:
               chrX:29601646-29601951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               2-324
               

               Cow position:
               chrX:18111562-18111259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               279, 40
               

               Conread position:
               3-295
               

               Cow position:
               chrX:46291323-46291036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               46, 71
               

               Conread position:
               4-187
               

               Cow position:
               chrX:27668780-27668954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               4-255
               

               Cow position:
               chrX:20957420-20957186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               4-274
               

               Cow position:
               chrX:21328095-21327825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               140, 38
               

               Conread position:
               4-283
               

               Cow position:
               chrX:27705768-27705497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               4-283
               

               Cow position:
               chrX:33654662-33654931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               242, 41
               

               Conread position:
               4-305
               

               Cow position:
               chrX:32420392-32420107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               92, 38
               

               Conread position:
               4-305
               

               Cow position:
               chrX:44961935-44961636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               272, 47
               

               Conread position:
               4-308
               

               Cow position:
               chrX:22074978-22074685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 37
               

               Conread position:
               4-308
               

               Cow position:
               chrX:27228310-27228008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               276, 36
               

               Conread position:
               4-308
               

               Cow position:
               chrX:37489910-37489611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 79
               

               Conread position:
               4-308
               

               Cow position:
               chrX:38218894-38218596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               88, 20
               

               Conread position:
               4-310
               

               Cow position:
               chrX:27508843-27509137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               202, 41
               

               Conread position:
               5-249
               

               Cow position:
               chrX:44192263-44192505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               111, 37
               

               Conread position:
               5-308
               

               Cow position:
               chrX:29542048-29542334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               5-308
               

               Cow position:
               chrX:47484082-47484383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               65, 17
               

               Conread position:
               5-321
               

               Cow position:
               chrX:40320587-40320277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               276, 37
               

               Conread position:
               8-283
               

               Cow position:
               chrX:46532313-46532590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               191, 34
               

               Conread position:
               8-305
               

               Cow position:
               chrX:30133143-30133434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               197, 19
               

               Conread position:
               8-308
               

               Cow position:
               chrX:26881384-26881683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               188, 41
               

               Conread position:
               9-290
               

               Cow position:
               chrX:10516430-10516159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               195, 35
               

               Conread position:
               10-274
               

               Cow position:
               chrX:13868879-13868622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               48, 16
               

               Conread position:
               10-304
               

               Cow position:
               chrX:34441278-34441563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               189, 34
               

               Conread position:
               11-305
               

               Cow position:
               chrX:28877992-28878281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               28, 185
               

               Conread position:
               11-308
               

               Cow position:
               chrX:42873563-42873277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               36, 12
               

               Conread position:
               12-259
               

               Cow position:
               chrX:15820772-15820531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               84, 46
               

               Conread position:
               13-256
               

               Cow position:
               chrX:25037164-25036924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               34, 51
               

               Conread position:
               16-173
               

               Cow position:
               chrX:34508716-34508562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               16-272
               

               Cow position:
               chrX:45883795-45884054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               37, 64
               

               Conread position:
               16-308
               

               Cow position:
               chrX:40557503-40557796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               16-308
               

               Cow position:
               chrX:41884236-41884529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               17-292
               

               Cow position:
               chrX:29549381-29549647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               263, 32
               

               Conread position:
               19-305
               

               Cow position:
               chrX:42235352-42235640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               202
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               170, 0
               

               Conread position:
               19-308
               

               Cow position:
               chrX:878213-878492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 23
               

               Conread position:
               19-308
               

               Cow position:
               chrX:17726145-17725859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               19-308
               

               Cow position:
               chrX:28134511-28134235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               35, 87
               

               Conread position:
               19-308
               

               Cow position:
               chrX:38853369-38853083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               22-300
               

               Cow position:
               chrX:7719014-7718749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               29, 51
               

               Conread position:
               22-304
               

               Cow position:
               chrX:8797419-8797141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               33, 115
               

               Conread position:
               22-304
               

               Cow position:
               chrX:29194398-29194123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               199
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               24-306
               

               Cow position:
               chrX:5872485-5872204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               28, 169
               

               Conread position:
               25-249
               

               Cow position:
               chrX:32623737-32623511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               27-318
               

               Cow position:
               chrX:46433653-46433361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               17, 26
               

               Conread position:
               28-220
               

               Cow position:
               chrX:20743763-20743575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               171, 19
               

               Conread position:
               28-233
               

               Cow position:
               chrX:24749250-24749047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               28, 102
               

               Conread position:
               28-233
               

               Cow position:
               chrX:40531879-40532084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               30, 165
               

               Conread position:
               28-272
               

               Cow position:
               chrX:23562797-23562556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               10, 173
               

               Conread position:
               28-272
               

               Cow position:
               chrX:41270822-41271077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               28-283
               

               Cow position:
               chrX:161572-161323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               12, 22
               

               Conread position:
               28-283
               

               Cow position:
               chrX:25035220-25035470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               99, 24
               

               Conread position:
               28-289
               

               Cow position:
               chrX:37129433-37129172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               30, 52
               

               Conread position:
               28-308
               

               Cow position:
               chrX:5017259-5017529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               168, 63
               

               Conread position:
               28-308
               

               Cow position:
               chrX:13382487-13382214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               19, 33
               

               Conread position:
               28-308
               

               Cow position:
               chrX:36068181-36067902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 251
               

               Conread position:
               28-308
               

               Cow position:
               chrX:40269654-40269373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 24
               

               Conread position:
               29-242
               

               Cow position:
               chrX:22392826-22393035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               29-249
               

               Cow position:
               chrX:32977923-32978133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               29-283
               

               Cow position:
               chrX:23113445-23113187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               164, 28
               

               Conread position:
               29-283
               

               Cow position:
               chrX:31250551-31250297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               20, 180
               

               Conread position:
               29-297
               

               Cow position:
               chrX:34377101-34376843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               29-306
               

               Cow position:
               chrX:38549610-38549339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               29, 166
               

               Conread position:
               29-306
               

               Cow position:
               chrX:41878771-41879045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               29, 52
               

               Conread position:
               29-307
               

               Cow position:
               chrX:24287771-24288038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               29-307
               

               Cow position:
               chrX:42927665-42927933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               29-308
               

               Cow position:
               chrX:6278337-6278617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               29-308
               

               Cow position:
               chrX:14599695-14599418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               20, 44
               

               Conread position:
               30-306
               

               Cow position:
               chrX:33493937-33493665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               31-308
               

               Cow position:
               chrX:45175011-45174734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               12, 30
               

               Conread position:
               31-308
               

               Cow position:
               chrX:45502305-45502037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               132, 18
               

               Conread position:
               32-266
               

               Cow position:
               chrX:1087987-1088209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               166, 17
               

               Conread position:
               32-283
               

               Cow position:
               chrX:29050404-29050157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 20
               

               Conread position:
               32-308
               

               Cow position:
               chrX:37780952-37781226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               33-196
               

               Cow position:
               chrX:2936115-2935952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               34-305
               

               Cow position:
               chrX:34222872-34222598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 61
               

               Conread position:
               34-308
               

               Cow position:
               chrX:5919651-5919381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               62, 12
               

               Conread position:
               34-308
               

               Cow position:
               chrX:11656239-11655977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 148
               

               Conread position:
               34-308
               

               Cow position:
               chrX:27145758-27145508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               34-308
               

               Cow position:
               chrX:31436628-31436363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               35-305
               

               Cow position:
               chrX:19273552-19273834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 17
               

               Conread position:
               35-308
               

               Cow position:
               chrX:12979677-12979942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               23, 197
               

               Conread position:
               36-289
               

               Cow position:
               chrX:34836910-34837150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               36-306
               

               Cow position:
               chrX:22387096-22387356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               245, 23
               

               Conread position:
               36-308
               

               Cow position:
               chrX:13177322-13177580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               36-308
               

               Cow position:
               chrX:25338344-25338068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               20, 45
               

               Conread position:
               36-308
               

               Cow position:
               chrX:37072545-37072293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               23, 118
               

               Conread position:
               36-313
               

               Cow position:
               chrX:29289730-29289460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               244, 16
               

               Conread position:
               37-308
               

               Cow position:
               chrX:13191405-13191659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               38-259
               

               Cow position:
               chrX:12082171-12082391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               148, 95
               

               Conread position:
               38-308
               

               Cow position:
               chrX:16762927-16762651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 41
               

               Conread position:
               38-308
               

               Cow position:
               chrX:34504896-34505162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               199
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               76, 41
               

               Conread position:
               39-297
               

               Cow position:
               chrX:6690107-6690361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               8, 157
               

               Conread position:
               41-272
               

               Cow position:
               chrX:47054376-47054606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               35, 22
               

               Conread position:
               42-307
               

               Cow position:
               chrX:33855074-33855347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               134, 10
               

               Conread position:
               42-308
               

               Cow position:
               chrX:14883805-14884073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               43-308
               

               Cow position:
               chrX:15815232-15814972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               44-283
               

               Cow position:
               chrX:918569-918817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               86, 74
               

               Conread position:
               44-308
               

               Cow position:
               chrX:38964256-38963990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 36
               

               Conread position:
               46-306
               

               Cow position:
               chrX:20697464-20697719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               230, 146
               

               Conread position:
               49-193
               

               Cow position:
               chrX:42479975-42479831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-235
               

               Cow position:
               chrX:27306596-27306410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               49-280
               

               Cow position:
               chrX:11317828-11318054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               49-306
               

               Cow position:
               chrX:14973605-14973854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               234, 10
               

               Conread position:
               49-306
               

               Cow position:
               chrX:32431766-32431511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               146, 212
               

               Conread position:
               49-307
               

               Cow position:
               chrX:38094378-38094637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               135, 87
               

               Conread position:
               49-307
               

               Cow position:
               chrX:45846244-45845985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 106
               

               Conread position:
               49-308
               

               Cow position:
               chrX:1615906-1616159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               149, 27
               

               Conread position:
               49-308
               

               Cow position:
               chrX:21986149-21986407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               49-308
               

               Cow position:
               chrX:32310248-32309994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               27, 31
               

               Conread position:
               49-308
               

               Cow position:
               chrX:38066312-38066565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               186
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               22, 172
               

               Conread position:
               49-308
               

               Cow position:
               chrX:38728876-38728622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               231, 128
               

               Conread position:
               50-308
               

               Cow position:
               chrX:37232549-37232298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 128
               

               Conread position:
               51-242
               

               Cow position:
               chrX:19943096-19943286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               145, 62
               

               Conread position:
               51-306
               

               Cow position:
               chrX:41123199-41122954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               232, 102
               

               Conread position:
               52-180
               

               Cow position:
               chrX:29467639-29467767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-199
               

               Cow position:
               chrX:4467106-4466959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               52-214
               

               Cow position:
               chrX:25412044-25411886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               52-233
               

               Cow position:
               chrX:16984779-16984587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               138, 32
               

               Conread position:
               52-235
               

               Cow position:
               chrX:29553424-29553243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               52-253
               

               Cow position:
               chrX:46429680-46429881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               160
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               144, 187
               

               Conread position:
               52-257
               

               Cow position:
               chrX:12437133-12437334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               52-271
               

               Cow position:
               chrX:4152892-4153113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               52-274
               

               Cow position:
               chrX:18272918-18273139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               18, 79
               

               Conread position:
               52-274
               

               Cow position:
               chrX:41238216-41238432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               52-275
               

               Cow position:
               chrX:5135381-5135607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               52-275
               

               Cow position:
               chrX:41192843-41192626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               140, 183
               

               Conread position:
               52-283
               

               Cow position:
               chrX:42855597-42855365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               151, 180
               

               Conread position:
               52-283
               

               Cow position:
               chrX:43527646-43527420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               52-289
               

               Cow position:
               chrX:7710400-7710634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               52-300
               

               Cow position:
               chrX:43730085-43730325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               52-305
               

               Cow position:
               chrX:37119731-37119483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               52-305
               

               Cow position:
               chrX:45429883-45430128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               52-306
               

               Cow position:
               chrX:1503466-1503225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               52-306
               

               Cow position:
               chrX:4043728-4043965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               113, 78
               

               Conread position:
               52-306
               

               Cow position:
               chrX:9650885-9651138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 0
               

               Conread position:
               52-306
               

               Cow position:
               chrX:46072678-46072933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               52-307
               

               Cow position:
               chrX:34792174-34792422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:7646395-7646141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               29, 135
               

               Conread position:
               52-308
               

               Cow position:
               chrX:9201687-9201435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:9365537-9365790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:11717644-11717899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               151, 225
               

               Conread position:
               52-308
               

               Cow position:
               chrX:15147058-15147304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               228, 84
               

               Conread position:
               52-308
               

               Cow position:
               chrX:27516657-27516413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               233, 27
               

               Conread position:
               52-308
               

               Cow position:
               chrX:31442690-31442937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               228, 175
               

               Conread position:
               52-308
               

               Cow position:
               chrX:31729581-31729328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:41871206-41870958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               192, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:42011420-42011168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 27
               

               Conread position:
               52-308
               

               Cow position:
               chrX:44397148-44396904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               52-308
               

               Cow position:
               chrX:45110795-45110544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               88, 139
               

               Conread position:
               52-315
               

               Cow position:
               chrX:35885589-35885852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               18, 7
               

               Conread position:
               52-324
               

               Cow position:
               chrX:36514753-36515021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               73, 144
               

               Conread position:
               53-229
               

               Cow position:
               chrX:47061534-47061358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               54-205
               

               Cow position:
               chrX:45382909-45383058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               54-236
               

               Cow position:
               chrX:2523545-2523721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               54-255
               

               Cow position:
               chrX:23561995-23561799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               21, 26
               

               Conread position:
               54-303
               

               Cow position:
               chrX:35224434-35224187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               8, 131
               

               Conread position:
               54-306
               

               Cow position:
               chrX:33539307-33539052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               177, 122
               

               Conread position:
               54-308
               

               Cow position:
               chrX:6544391-6544141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               190
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               155, 76
               

               Conread position:
               54-308
               

               Cow position:
               chrX:34532660-34532406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 150
               

               Conread position:
               54-308
               

               Cow position:
               chrX:42171160-42171411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               152, 9
               

               Conread position:
               54-313
               

               Cow position:
               chrX:8925836-8925581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               8, 19
               

               Conread position:
               55-307
               

               Cow position:
               chrX:27431782-27432028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               55-313
               

               Cow position:
               chrX:20151992-20151726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               141, 81
               

               Conread position:
               56-288
               

               Cow position:
               chrX:38560694-38560462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               135, 160
               

               Conread position:
               56-297
               

               Cow position:
               chrX:31515309-31515065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               75, 176
               

               Conread position:
               56-308
               

               Cow position:
               chrX:6265464-6265712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               57-275
               

               Cow position:
               chrX:48014569-48014353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               17, 11
               

               Conread position:
               57-298
               

               Cow position:
               chrX:48044382-48044619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               225, 19
               

               Conread position:
               57-299
               

               Cow position:
               chrX:34314158-34313923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               57-306
               

               Cow position:
               chrX:18694796-18695036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               5, 74
               

               Conread position:
               57-308
               

               Cow position:
               chrX:616125-616377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               57-308
               

               Cow position:
               chrX:618875-619119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               57-308
               

               Cow position:
               chrX:7695882-7695633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               170, 11
               

               Conread position:
               57-308
               

               Cow position:
               chrX:20584462-20584209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 126
               

               Conread position:
               57-308
               

               Cow position:
               chrX:31312163-31311914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 0
               

               Conread position:
               57-308
               

               Cow position:
               chrX:34315655-34315410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               68, 175
               

               Conread position:
               57-308
               

               Cow position:
               chrX:47481930-47481685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               219, 76
               

               Conread position:
               57-313
               

               Cow position:
               chrX:11082488-11082734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               179, 0
               

               Conread position:
               57-313
               

               Cow position:
               chrX:29121181-29120926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               58-236
               

               Cow position:
               chrX:11325965-11326143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               125, 27
               

               Conread position:
               58-305
               

               Cow position:
               chrX:39558216-39558462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               58-308
               

               Cow position:
               chrX:11938801-11939042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               93, 5
               

               Conread position:
               58-308
               

               Cow position:
               chrX:37986358-37986118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               140, 60
               

               Conread position:
               59-301
               

               Cow position:
               chrX:7278043-7277811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               163, 128
               

               Conread position:
               59-304
               

               Cow position:
               chrX:11614825-11614588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               221, 58
               

               Conread position:
               59-304
               

               Cow position:
               chrX:35288787-35288545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               40, 84
               

               Conread position:
               59-305
               

               Cow position:
               chrX:30543152-30543399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               148, 224
               

               Conread position:
               59-306
               

               Cow position:
               chrX:10411852-10412098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               16, 133
               

               Conread position:
               59-306
               

               Cow position:
               chrX:27393894-27394132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               59-307
               

               Cow position:
               chrX:45414172-45414414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               59-308
               

               Cow position:
               chrX:5679440-5679681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               217, 63
               

               Conread position:
               59-308
               

               Cow position:
               chrX:11084932-11085172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               223, 46
               

               Conread position:
               59-308
               

               Cow position:
               chrX:40480735-40480984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               26, 73
               

               Conread position:
               59-308
               

               Cow position:
               chrX:46587954-46587702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               9, 14
               

               Conread position:
               60-169
               

               Cow position:
               chrX:4617267-4617376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               88
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               60-283
               

               Cow position:
               chrX:45649013-45648783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               67, 149
               

               Conread position:
               60-302
               

               Cow position:
               chrX:37574971-37574742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               60-304
               

               Cow position:
               chrX:43568050-43567811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               60-306
               

               Cow position:
               chrX:35413741-35413507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               180, 77
               

               Conread position:
               60-306
               

               Cow position:
               chrX:41068856-41068610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               177
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               130, 229
               

               Conread position:
               60-307
               

               Cow position:
               chrX:17662467-17662707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               14, 19
               

               Conread position:
               60-308
               

               Cow position:
               chrX:917237-917479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               61-289
               

               Cow position:
               chrX:11454919-11455142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               142, 44
               

               Conread position:
               63-250
               

               Cow position:
               chrX:19469378-19469563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               63-308
               

               Cow position:
               chrX:7722117-7721874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               17, 75
               

               Conread position:
               63-308
               

               Cow position:
               chrX:38006641-38006879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               10, 87
               

               Conread position:
               63-308
               

               Cow position:
               chrX:45977054-45976805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               64-308
               

               Cow position:
               chrX:15007022-15007265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               216, 136
               

               Conread position:
               68-279
               

               Cow position:
               chrX:47873214-47873422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               122, 9
               

               Conread position:
               68-304
               

               Cow position:
               chrX:37910568-37910335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               130, 164
               

               Conread position:
               71-246
               

               Cow position:
               chrX:47362503-47362676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               71-296
               

               Cow position:
               chrX:47967727-47967495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               78-300
               

               Cow position:
               chrX:10959282-10959504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               141, 114
               

               Conread position:
               78-300
               

               Cow position:
               chrX:44837089-44836879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               78-300
               

               Cow position:
               chrX:48194922-48195147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               122, 110
               

               Conread position:
               78-305
               

               Cow position:
               chrX:7572018-7571792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               78-307
               

               Cow position:
               chrX:7509252-7509028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               78-307
               

               Cow position:
               chrX:21566520-21566288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               78-308
               

               Cow position:
               chrX:29680148-29680375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               78-308
               

               Cow position:
               chrX:38936813-38936585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               116, 199
               

               Conread position:
               78-308
               

               Cow position:
               chrX:46722621-46722852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               203, 123
               

               Conread position:
               83-305
               

               Cow position:
               chrX:26625563-26625782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               106, 164
               

               Conread position:
               83-308
               

               Cow position:
               chrX:13913183-13912964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               85, 165
               

               Conread position:
               83-308
               

               Cow position:
               chrX:23513909-23514130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               83-308
               

               Cow position:
               chrX:36356213-36356000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               85-282
               

               Cow position:
               chrX:33204862-33205053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               11, 108
               

               Conread position:
               85-316
               

               Cow position:
               chrX:27680504-27680276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               111, 164
               

               Conread position:
               86-308
               

               Cow position:
               chrX:1499770-1499550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               202, 115
               

               Conread position:
               86-308
               

               Cow position:
               chrX:39126431-39126218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               86-308
               

               Cow position:
               chrX:48262711-48262491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               195, 114
               

               Conread position:
               89-279
               

               Cow position:
               chrX:36061262-36061072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               89-308
               

               Cow position:
               chrX:22921423-22921201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               171, 112
               

               Conread position:
               90-308
               

               Cow position:
               chrX:27685350-27685132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               22, 107
               

               Conread position:
               91-283
               

               Cow position:
               chrX:43779747-43779936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               91-301
               

               Cow position:
               chrX:11856530-11856320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               189, 150
               

               Conread position:
               91-308
               

               Cow position:
               chrX:17630701-17630918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               24, 169
               

               Conread position:
               93-283
               

               Cow position:
               chrX:16348473-16348658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               94-260
               

               Cow position:
               chrX:41111813-41111654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               94-306
               

               Cow position:
               chrX:17542058-17541851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 158
               

               Conread position:
               94-306
               

               Cow position:
               chrX:45113716-45113504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               70, 97
               

               Conread position:
               94-308
               

               Cow position:
               chrX:22624573-22624369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               94-308
               

               Cow position:
               chrX:26440688-26440894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               186, 43
               

               Conread position:
               95-241
               

               Cow position:
               chrX:44095356-44095209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               95-275
               

               Cow position:
               chrX:45099224-45099043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               95-308
               

               Cow position:
               chrX:21004780-21004567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               109, 141
               

               Conread position:
               95-308
               

               Cow position:
               chrX:40692655-40692866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               104, 80
               

               Conread position:
               96-313
               

               Cow position:
               chrX:34402095-34401878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               102, 87
               

               Conread position:
               97-308
               

               Cow position:
               chrX:12405287-12405502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               108, 95
               

               Conread position:
               99-290
               

               Cow position:
               chrX:48201385-48201199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               40, 13
               

               Conread position:
               100-265
               

               Cow position:
               chrX:19965305-19965474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               98, 90
               

               Conread position:
               100-279
               

               Cow position:
               chrX:2467975-2467800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               100-279
               

               Cow position:
               chrX:45403734-45403913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               100-279
               

               Cow position:
               chrX:48652630-48652806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               100-280
               

               Cow position:
               chrX:35590665-35590844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               100-289
               

               Cow position:
               chrX:4296734-4296916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               183, 85
               

               Conread position:
               100-298
               

               Cow position:
               chrX:33000996-33000798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               94, 103
               

               Conread position:
               100-300
               

               Cow position:
               chrX:45875483-45875284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               176, 92
               

               Conread position:
               100-300
               

               Cow position:
               chrX:47300812-47301009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               91, 110
               

               Conread position:
               100-303
               

               Cow position:
               chrX:47238184-47237984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               160, 109
               

               Conread position:
               100-306
               

               Cow position:
               chrX:11844150-11844360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               56, 50
               

               Conread position:
               100-308
               

               Cow position:
               chrX:1055290-1055508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               91, 169
               

               Conread position:
               100-308
               

               Cow position:
               chrX:26493542-26493752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               100-308
               

               Cow position:
               chrX:34662755-34662965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               181, 110
               

               Conread position:
               100-308
               

               Cow position:
               chrX:37843808-37843605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               181, 13
               

               Conread position:
               100-313
               

               Cow position:
               chrX:21642391-21642598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               176, 85
               

               Conread position:
               101-304
               

               Cow position:
               chrX:44656867-44657074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               64, 53
               

               Conread position:
               101-305
               

               Cow position:
               chrX:44873471-44873673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               180, 35
               

               Conread position:
               101-308
               

               Cow position:
               chrX:27945964-27946174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               180, 0
               

               Conread position:
               102-258
               

               Cow position:
               chrX:43973634-43973479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               96, 76
               

               Conread position:
               102-292
               

               Cow position:
               chrX:1572050-1572238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               178, 90
               

               Conread position:
               104-308
               

               Cow position:
               chrX:48385276-48385475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               176, 52
               

               Conread position:
               104-313
               

               Cow position:
               chrX:20710161-20709955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               106-279
               

               Cow position:
               chrX:4991928-4992098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               106-306
               

               Cow position:
               chrX:29723825-29723628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               179, 95
               

               Conread position:
               106-308
               

               Cow position:
               chrX:5638084-5638280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               110-307
               

               Cow position:
               chrX:19003374-19003186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               111-272
               

               Cow position:
               chrX:44569164-44569004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               149, 81
               

               Conread position:
               112-307
               

               Cow position:
               chrX:11589509-11589702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               169, 83
               

               Conread position:
               117-308
               

               Cow position:
               chrX:13785286-13785478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               151
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               118-313
               

               Cow position:
               chrX:6234376-6234573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               121-308
               

               Cow position:
               chrX:26875811-26875998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               122-318
               

               Cow position:
               chrX:20790982-20790796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               125-308
               

               Cow position:
               chrX:34192736-34192558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               133-308
               

               Cow position:
               chrX:41166904-41167080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               110, 103
               

               Conread position:
               135-308
               

               Cow position:
               chrX:42875039-42874866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               144, 57
               

               Conread position:
               136-308
               

               Cow position:
               chrX:34991091-34990920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               65, 103
               

               Conread position:
               137-308
               

               Cow position:
               chrX:28845887-28845717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               77, 65
               

               Conread position:
               137-308
               

               Cow position:
               chrX:36961695-36961524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               143, 53
               

               Conread position:
               137-308
               

               Cow position:
               chrX:41991991-41992161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               12, 47
               

               Conread position:
               138-289
               

               Cow position:
               chrX:41199161-41199011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               26, 56
               

               Conread position:
               141-305
               

               Cow position:
               chrX:42461694-42461856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               141-308
               

               Cow position:
               chrX:19015487-19015323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 84
               

               Conread position:
               141-308
               

               Cow position:
               chrX:35681392-35681223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               139, 61
               

               Conread position:
               141-308
               

               Cow position:
               chrX:42994663-42994501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               139, 51
               

               Conread position:
               147-308
               

               Cow position:
               chrX:17498129-17497970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 44
               

               Conread position:
               148-283
               

               Cow position:
               chrX:28835859-28835994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               148-308
               

               Cow position:
               chrX:40648029-40647872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               153-306
               

               Cow position:
               chrX:23497626-23497781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               14, 42
               

               Conread position:
               155-308
               

               Cow position:
               chrX:41743952-41743796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               156-306
               

               Cow position:
               chrX:17908253-17908399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               156-308
               

               Cow position:
               chrX:30832817-30832962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               164-308
               

               Cow position:
               chrX:38439508-38439363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               168-316
               

               Cow position:
               chrX:9770653-9770802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               169-308
               

               Cow position:
               chrX:4750281-4750419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               181-308
               

               Cow position:
               chrX:35610002-35609873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               130
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-142
Cow position:	chrX:31983394-31983536 (view UCSC Genome Browser custom track)
Alignm length:	143
Alignm identity:	110
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	51, 0
Conread position:	1-188
Cow position:	chrX:10252018-10252195 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	138
Alignm E-value:	6e-24
Alignm gaps (pig, cow):	146, 26
Conread position:	1-227
Cow position:	chrX:28940428-28940212 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	165
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	101, 37
Conread position:	1-234
Cow position:	chrX:19394739-19394511 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	174
Alignm E-value:	8e-38
Alignm gaps (pig, cow):	58, 21
Conread position:	1-238
Cow position:	chrX:6599590-6599831 (view UCSC Genome Browser custom track)
Alignm length:	244
Alignm identity:	176
Alignm E-value:	7e-36
Alignm gaps (pig, cow):	21, 55
Conread position:	1-247
Cow position:	chrX:35986004-35985764 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	178
Alignm E-value:	8e-38
Alignm gaps (pig, cow):	48, 0
Conread position:	1-272
Cow position:	chrX:22115131-22115396 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	197
Alignm E-value:	1.00053e-42
Alignm gaps (pig, cow):	261, 48
Conread position:	1-286
Cow position:	chrX:1466344-1466068 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	231
Alignm E-value:	0
Alignm gaps (pig, cow):	22, 0
Conread position:	1-289
Cow position:	chrX:12095587-12095870 (view UCSC Genome Browser custom track)
Alignm length:	292
Alignm identity:	199
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	153, 26
Conread position:	1-296
Cow position:	chrX:28013254-28013551 (view UCSC Genome Browser custom track)
Alignm length:	302
Alignm identity:	195
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	153, 59
Conread position:	1-297
Cow position:	chrX:27302061-27301766 (view UCSC Genome Browser custom track)
Alignm length:	306
Alignm identity:	205
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	129, 22
Conread position:	1-298
Cow position:	chrX:17795164-17794878 (view UCSC Genome Browser custom track)
Alignm length:	299
Alignm identity:	212
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	187, 22
Conread position:	1-300
Cow position:	chrX:8869220-8869509 (view UCSC Genome Browser custom track)
Alignm length:	301
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	69, 22
Conread position:	1-301
Cow position:	chrX:29230191-29229902 (view UCSC Genome Browser custom track)
Alignm length:	304
Alignm identity:	221
Alignm E-value:	0
Alignm gaps (pig, cow):	22, 44
Conread position:	1-306
Cow position:	chrX:6414222-6413931 (view UCSC Genome Browser custom track)
Alignm length:	310
Alignm identity:	231
Alignm E-value:	0
Alignm gaps (pig, cow):	278, 23
Conread position:	1-307
Cow position:	chrX:42380926-42381216 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	225
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	280, 37
Conread position:	1-308
Cow position:	chrX:5118314-5118617 (view UCSC Genome Browser custom track)
Alignm length:	312
Alignm identity:	237
Alignm E-value:	0
Alignm gaps (pig, cow):	143, 29
Conread position:	1-310
Cow position:	chrX:24365638-24365945 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	224
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	198, 23
Conread position:	1-313
Cow position:	chrX:34554908-34554604 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	202
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	277, 34
Conread position:	2-185
Cow position:	chrX:38301997-38301815 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	129
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	45, 51