Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-197 |
| Cow position: | chr10:48208612-48208426 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 142, 20 |
| Conread position: | 1-285 |
| Cow position: | chr10:27222945-27223220 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 1-338 |
| Cow position: | chr10:68979718-68980025 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 1-398 |
| Cow position: | chr10:23879986-23879599 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 60 |
| Conread position: | 1-398 |
| Cow position: | chr10:53375103-53374746 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-400 |
| Cow position: | chr10:11275831-11276227 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 1-400 |
| Cow position: | chr10:22455367-22455747 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chr10:37428508-37428124 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 1-402 |
| Cow position: | chr10:12199181-12199582 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 7-400 |
| Cow position: | chr10:17415706-17415342 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 279 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 196, 29 |
| Conread position: | 7-400 |
| Cow position: | chr10:68203915-68203529 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 10-398 |
| Cow position: | chr10:16669178-16668783 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 10-400 |
| Cow position: | chr10:50141336-50140958 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 11-240 |
| Cow position: | chr10:36303635-36303404 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 156, 52 |
| Conread position: | 11-305 |
| Cow position: | chr10:60688164-60687876 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 240, 48 |
| Conread position: | 11-400 |
| Cow position: | chr10:3318055-3318442 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 11-400 |
| Cow position: | chr10:28509057-28508673 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 51 |
| Conread position: | 11-401 |
| Cow position: | chr10:18863052-18863432 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 76 |
| Conread position: | 12-255 |
| Cow position: | chr10:38472395-38472628 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 15-400 |
| Cow position: | chr10:767596-767230 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 20-244 |
| Cow position: | chr10:17923211-17923432 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 24-216 |
| Cow position: | chr10:55438082-55437897 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 25-353 |
| Cow position: | chr10:15824333-15824014 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 25-398 |
| Cow position: | chr10:43060902-43060536 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 30-400 |
| Cow position: | chr10:2711553-2711176 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 185 |
| Conread position: | 31-400 |
| Cow position: | chr10:47583899-47584248 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 10 |
| Conread position: | 63-235 |
| Cow position: | chr10:25257845-25258017 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 71-400 |
| Cow position: | chr10:1328248-1327936 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 181 |
| Conread position: | 72-400 |
| Cow position: | chr10:3854973-3855286 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 80-402 |
| Cow position: | chr10:19128559-19128229 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 83-398 |
| Cow position: | chr10:57993964-57993661 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 85-402 |
| Cow position: | chr10:17745369-17745669 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 19 |
| Conread position: | 96-393 |
| Cow position: | chr10:9464458-9464773 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 101-397 |
| Cow position: | chr10:35181956-35182248 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 31 |
| Conread position: | 113-392 |
| Cow position: | chr10:17513596-17513337 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 114-393 |
| Cow position: | chr10:15618160-15617893 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 118-398 |
| Cow position: | chr10:24609061-24609346 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 126-401 |
| Cow position: | chr10:21477266-21477539 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 77, 28 |
| Conread position: | 129-399 |
| Cow position: | chr10:52131864-52132124 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 133-340 |
| Cow position: | chr10:37092791-37092583 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 133-397 |
| Cow position: | chr10:41638086-41638351 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 139-393 |
| Cow position: | chr10:67051196-67051445 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 141-342 |
| Cow position: | chr10:57404366-57404171 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 142-400 |
| Cow position: | chr10:37665282-37665026 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 104 |
| Conread position: | 146-400 |
| Cow position: | chr10:5422071-5421816 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 149-398 |
| Cow position: | chr10:63621558-63621313 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 151-342 |
| Cow position: | chr10:48193382-48193192 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 154-401 |
| Cow position: | chr10:21563304-21563563 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 160-398 |
| Cow position: | chr10:29487197-29487418 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 165-398 |
| Cow position: | chr10:45195697-45195925 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 167-388 |
| Cow position: | chr10:28565803-28565592 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 169-383 |
| Cow position: | chr10:31220496-31220708 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 78 |
| Conread position: | 174-370 |
| Cow position: | chr10:54342967-54342770 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 175-397 |
| Cow position: | chr10:60243958-60244174 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 176-353 |
| Cow position: | chr10:23589791-23589622 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 180-400 |
| Cow position: | chr10:48208308-48208097 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 66 |
| Conread position: | 181-334 |
| Cow position: | chr10:3536325-3536180 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 192-398 |
| Cow position: | chr10:40401882-40402081 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 201-357 |
| Cow position: | chr10:49280150-49279995 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 205-399 |
| Cow position: | chr10:4013657-4013841 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 205-399 |
| Cow position: | chr10:62629705-62629889 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 209-400 |
| Cow position: | chr10:25536403-25536596 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 219-400 |
| Cow position: | chr10:30320800-30320972 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 221-398 |
| Cow position: | chr10:4605565-4605391 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 229-402 |
| Cow position: | chr10:22859779-22859606 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 231-400 |
| Cow position: | chr10:33995602-33995434 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 232-372 |
| Cow position: | chr10:1352258-1352397 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 232-398 |
| Cow position: | chr10:57295147-57294983 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 235-400 |
| Cow position: | chr10:55437628-55437466 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 243-399 |
| Cow position: | chr10:25008802-25008646 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 248-400 |
| Cow position: | chr10:55874154-55874303 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 260-398 |
| Cow position: | chr10:30708717-30708580 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 119 |
| Conread position: | 266-399 |
| Cow position: | chr10:30358051-30357918 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-400 |
| Cow position: | chr10:50964150-50964286 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 276-400 |
| Cow position: | chr10:46010276-46010152 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-397 |
| Cow position: | chr10:2630507-2630631 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 277-400 |
| Cow position: | chr10:53443156-53443280 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 277-402 |
| Cow position: | chr10:6175229-6175358 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 279-400 |
| Cow position: | chr10:46073640-46073762 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 96 |
| Conread position: | 282-400 |
| Cow position: | chr10:27224172-27224287 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 287-400 |
| Cow position: | chr10:45651173-45651286 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.