Cow genome map
Conread name: | rcte04_l7.y1 |
Conread position: | 1-362 |
Cow position: | chr12:7025292-7024934 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 21 |
Conread position: | 1-369 |
Cow position: | chr12:18442831-18443174 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 268 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 135, 19 |
Conread position: | 1-397 |
Cow position: | chr12:21066358-21066754 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 19 |
Conread position: | 1-398 |
Cow position: | chr12:10161799-10161401 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 36 |
Conread position: | 1-400 |
Cow position: | chr12:1993417-1993009 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 18 |
Conread position: | 1-400 |
Cow position: | chr12:8468025-8467644 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 63 |
Conread position: | 1-402 |
Cow position: | chr12:33278070-33278451 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 284 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 71, 19 |
Conread position: | 3-398 |
Cow position: | chr12:26310929-26310558 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 285 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 133, 17 |
Conread position: | 3-402 |
Cow position: | chr12:2838091-2837710 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 62 |
Conread position: | 3-402 |
Cow position: | chr12:16961763-16962150 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 17 |
Conread position: | 4-402 |
Cow position: | chr12:33875693-33875278 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 291 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 20, 58 |
Conread position: | 8-400 |
Cow position: | chr12:7936918-7936534 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 243 |
Conread position: | 15-372 |
Cow position: | chr12:36975245-36974908 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 53 |
Conread position: | 20-370 |
Cow position: | chr12:27423428-27423775 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 56 |
Conread position: | 22-400 |
Cow position: | chr12:8767451-8767079 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 46 |
Conread position: | 32-400 |
Cow position: | chr12:28214288-28214641 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 37 |
Conread position: | 60-402 |
Cow position: | chr12:12709958-12709641 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 247 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 76, 95 |
Conread position: | 69-400 |
Cow position: | chr12:20227164-20226832 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 99 |
Conread position: | 77-400 |
Cow position: | chr12:11306414-11306090 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 146 |
Conread position: | 99-400 |
Cow position: | chr12:38223302-38222991 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 225 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 42, 218 |
Conread position: | 104-379 |
Cow position: | chr12:7086359-7086628 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 198 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 32, 75 |
Conread position: | 106-400 |
Cow position: | chr12:5896818-5896519 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 26 |
Conread position: | 116-395 |
Cow position: | chr12:27718091-27718359 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 199 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 20, 62 |
Conread position: | 121-330 |
Cow position: | chr12:23515969-23515767 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 151 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 99, 21 |
Conread position: | 121-399 |
Cow position: | chr12:48436787-48436506 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 193 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 15, 100 |
Conread position: | 129-400 |
Cow position: | chr12:33277337-33277069 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 118 |
Conread position: | 136-402 |
Cow position: | chr12:23499101-23499367 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 196 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 12, 90 |
Conread position: | 141-398 |
Cow position: | chr12:38588187-38588421 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 184 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 253, 57 |
Conread position: | 141-400 |
Cow position: | chr12:32425897-32426155 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 185 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 96, 49 |
Conread position: | 147-344 |
Cow position: | chr12:12763913-12763718 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 151 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 58, 97 |
Conread position: | 149-338 |
Cow position: | chr12:13747686-13747493 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 147 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 101, 43 |
Conread position: | 150-400 |
Cow position: | chr12:33350640-33350882 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 161-402 |
Cow position: | chr12:34475914-34476146 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 188 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 44, 62 |
Conread position: | 162-400 |
Cow position: | chr12:29759178-29758938 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 101 |
Conread position: | 165-398 |
Cow position: | chr12:21064479-21064264 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 172 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 10, 63 |
Conread position: | 167-261 |
Cow position: | chr12:22474189-22474281 (view UCSC Genome Browser custom track) |
Alignm length: | 95 |
Alignm identity: | 81 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 67, 0 |
Conread position: | 174-399 |
Cow position: | chr12:11187560-11187777 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 166 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 32, 49 |
Conread position: | 175-400 |
Cow position: | chr12:14236335-14236539 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 171 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 30, 11 |
Conread position: | 183-400 |
Cow position: | chr12:27111210-27111420 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 173 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 10, 25 |
Conread position: | 186-352 |
Cow position: | chr12:25419683-25419520 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 124 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 5, 13 |
Conread position: | 188-400 |
Cow position: | chr12:10926812-10926597 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 159 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 49, 17 |
Conread position: | 192-400 |
Cow position: | chr12:42854111-42854313 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 168 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 13, 56 |
Conread position: | 193-400 |
Cow position: | chr12:13582606-13582813 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 146 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 75, 44 |
Conread position: | 197-400 |
Cow position: | chr12:19808954-19808748 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 151 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 54, 40 |
Conread position: | 200-400 |
Cow position: | chr12:18337265-18337463 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 148 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 50, 139 |
Conread position: | 202-400 |
Cow position: | chr12:29801542-29801740 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 148 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 59, 41 |
Conread position: | 206-400 |
Cow position: | chr12:15147399-15147600 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 152 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 42, 14 |
Conread position: | 210-400 |
Cow position: | chr12:26871000-26870803 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 148 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 48, 167 |
Conread position: | 211-396 |
Cow position: | chr12:25514457-25514644 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 153 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 216-400 |
Cow position: | chr12:3572459-3572649 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 137 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 231-400 |
Cow position: | chr12:20792166-20791996 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 137 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 37, 74 |
Conread position: | 246-400 |
Cow position: | chr12:39710019-39710173 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 122 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 273-400 |
Cow position: | chr12:33451821-33451693 (view UCSC Genome Browser custom track) |
Alignm length: | 129 |
Alignm identity: | 97 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 277-398 |
Cow position: | chr12:27800028-27800150 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 98 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 40, 97 |
Conread position: | 282-400 |
Cow position: | chr12:26824483-26824604 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 99 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 8, 46 |
Show alignments to all cow chromosomes.