Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-362
Cow position: chr12:7025292-7024934 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 21

Conread position: 1-369
Cow position: chr12:18442831-18443174 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 135, 19

Conread position: 1-397
Cow position: chr12:21066358-21066754 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 1-398
Cow position: chr12:10161799-10161401 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 36

Conread position: 1-400
Cow position: chr12:1993417-1993009 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 18

Conread position: 1-400
Cow position: chr12:8468025-8467644 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 1-402
Cow position: chr12:33278070-33278451 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 71, 19

Conread position: 3-398
Cow position: chr12:26310929-26310558 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 133, 17

Conread position: 3-402
Cow position: chr12:2838091-2837710 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 62

Conread position: 3-402
Cow position: chr12:16961763-16962150 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 17

Conread position: 4-402
Cow position: chr12:33875693-33875278 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 291
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 58

Conread position: 8-400
Cow position: chr12:7936918-7936534 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 243

Conread position: 15-372
Cow position: chr12:36975245-36974908 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 53

Conread position: 20-370
Cow position: chr12:27423428-27423775 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 56

Conread position: 22-400
Cow position: chr12:8767451-8767079 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 46

Conread position: 32-400
Cow position: chr12:28214288-28214641 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 37

Conread position: 60-402
Cow position: chr12:12709958-12709641 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 76, 95

Conread position: 69-400
Cow position: chr12:20227164-20226832 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 99

Conread position: 77-400
Cow position: chr12:11306414-11306090 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 146

Conread position: 99-400
Cow position: chr12:38223302-38222991 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 42, 218

Conread position: 104-379
Cow position: chr12:7086359-7086628 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 32, 75

Conread position: 106-400
Cow position: chr12:5896818-5896519 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 26

Conread position: 116-395
Cow position: chr12:27718091-27718359 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 62

Conread position: 121-330
Cow position: chr12:23515969-23515767 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 99, 21

Conread position: 121-399
Cow position: chr12:48436787-48436506 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 100

Conread position: 129-400
Cow position: chr12:33277337-33277069 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 118

Conread position: 136-402
Cow position: chr12:23499101-23499367 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 12, 90

Conread position: 141-398
Cow position: chr12:38588187-38588421 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 253, 57

Conread position: 141-400
Cow position: chr12:32425897-32426155 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 96, 49

Conread position: 147-344
Cow position: chr12:12763913-12763718 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 58, 97

Conread position: 149-338
Cow position: chr12:13747686-13747493 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 101, 43

Conread position: 150-400
Cow position: chr12:33350640-33350882 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 161-402
Cow position: chr12:34475914-34476146 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 44, 62

Conread position: 162-400
Cow position: chr12:29759178-29758938 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 101

Conread position: 165-398
Cow position: chr12:21064479-21064264 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 10, 63

Conread position: 167-261
Cow position: chr12:22474189-22474281 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 174-399
Cow position: chr12:11187560-11187777 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 32, 49

Conread position: 175-400
Cow position: chr12:14236335-14236539 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 11

Conread position: 183-400
Cow position: chr12:27111210-27111420 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 10, 25

Conread position: 186-352
Cow position: chr12:25419683-25419520 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 13

Conread position: 188-400
Cow position: chr12:10926812-10926597 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 17

Conread position: 192-400
Cow position: chr12:42854111-42854313 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 56

Conread position: 193-400
Cow position: chr12:13582606-13582813 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 44

Conread position: 197-400
Cow position: chr12:19808954-19808748 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 54, 40

Conread position: 200-400
Cow position: chr12:18337265-18337463 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 139

Conread position: 202-400
Cow position: chr12:29801542-29801740 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 59, 41

Conread position: 206-400
Cow position: chr12:15147399-15147600 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 14

Conread position: 210-400
Cow position: chr12:26871000-26870803 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 48, 167

Conread position: 211-396
Cow position: chr12:25514457-25514644 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 153
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 0

Conread position: 216-400
Cow position: chr12:3572459-3572649 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 231-400
Cow position: chr12:20792166-20791996 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 37, 74

Conread position: 246-400
Cow position: chr12:39710019-39710173 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 273-400
Cow position: chr12:33451821-33451693 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 277-398
Cow position: chr12:27800028-27800150 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 97

Conread position: 282-400
Cow position: chr12:26824483-26824604 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 46

Show alignments to all cow chromosomes.