Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-273
Cow position: chr13:26943007-26943279 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 19

Conread position: 1-285
Cow position: chr13:39487533-39487813 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 141, 19

Conread position: 1-327
Cow position: chr13:21878479-21878153 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 83

Conread position: 1-328
Cow position: chr13:34336473-34336766 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 135, 54

Conread position: 1-361
Cow position: chr13:17169408-17169747 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 59

Conread position: 1-372
Cow position: chr13:51240938-51241295 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 1-400
Cow position: chr13:12325318-12325680 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 62

Conread position: 1-400
Cow position: chr13:19115632-19116000 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 1-400
Cow position: chr13:24404160-24403777 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 19

Conread position: 1-400
Cow position: chr13:34264888-34264513 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 70

Conread position: 1-400
Cow position: chr13:34885175-34885576 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 75

Conread position: 1-400
Cow position: chr13:37497941-37498298 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 347, 19

Conread position: 1-402
Cow position: chr13:55406874-55407262 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 62

Conread position: 2-199
Cow position: chr13:18839131-18839323 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 79, 61

Conread position: 3-344
Cow position: chr13:46464605-46464283 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 17

Conread position: 3-400
Cow position: chr13:17596987-17597360 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 12

Conread position: 3-400
Cow position: chr13:45497469-45497856 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 67

Conread position: 4-398
Cow position: chr13:43848887-43848521 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 262
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 41

Conread position: 6-384
Cow position: chr13:28605617-28605997 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 76

Conread position: 8-398
Cow position: chr13:43803135-43803516 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 128, 12

Conread position: 8-400
Cow position: chr13:33239724-33240112 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 63

Conread position: 8-402
Cow position: chr13:14080246-14079852 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 139

Conread position: 9-250
Cow position: chr13:17127542-17127306 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 128, 67

Conread position: 9-371
Cow position: chr13:30835945-30836291 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 243
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 283, 67

Conread position: 9-400
Cow position: chr13:15731353-15730976 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 273
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 86, 55

Conread position: 10-384
Cow position: chr13:50661948-50662328 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 30, 78

Conread position: 10-400
Cow position: chr13:4908332-4908693 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 269
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 126, 59

Conread position: 11-364
Cow position: chr13:47325676-47325339 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 51

Conread position: 11-397
Cow position: chr13:44144191-44143815 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 65

Conread position: 11-400
Cow position: chr13:19015256-19014872 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 64

Conread position: 15-330
Cow position: chr13:20656546-20656864 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 46

Conread position: 15-398
Cow position: chr13:38535173-38534808 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 51

Conread position: 20-395
Cow position: chr13:25955400-25955031 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 42

Conread position: 25-400
Cow position: chr13:43385024-43385387 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 57

Conread position: 29-305
Cow position: chr13:24675891-24676165 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 39

Conread position: 32-379
Cow position: chr13:51142774-51142445 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 18

Conread position: 67-400
Cow position: chr13:51435219-51434889 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 155

Conread position: 68-400
Cow position: chr13:27529034-27529353 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 222
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 68, 17

Conread position: 69-400
Cow position: chr13:26255470-26255130 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 8, 174

Conread position: 71-400
Cow position: chr13:11223155-11222838 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 114

Conread position: 79-399
Cow position: chr13:6921304-6921002 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 8

Conread position: 89-275
Cow position: chr13:47279996-47279805 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 108

Conread position: 92-371
Cow position: chr13:5619395-5619111 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 43, 90

Conread position: 92-398
Cow position: chr13:12213767-12214074 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 40

Conread position: 100-345
Cow position: chr13:34931557-34931791 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 43, 53

Conread position: 104-400
Cow position: chr13:4796124-4796423 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 137

Conread position: 105-366
Cow position: chr13:12658015-12658266 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 109-400
Cow position: chr13:698693-698969 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 27, 73

Conread position: 115-388
Cow position: chr13:10854705-10854432 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 75

Conread position: 127-401
Cow position: chr13:43928914-43928646 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 112, 70

Conread position: 128-400
Cow position: chr13:57611548-57611819 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 77, 17

Conread position: 133-400
Cow position: chr13:38361967-38361700 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 55

Conread position: 142-366
Cow position: chr13:28590502-28590717 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 74

Conread position: 142-389
Cow position: chr13:11778208-11778430 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 142-400
Cow position: chr13:2416386-2416641 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 142-400
Cow position: chr13:18597024-18596785 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 202
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 63, 96

Conread position: 142-400
Cow position: chr13:22193751-22194003 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 29

Conread position: 142-400
Cow position: chr13:59997460-59997198 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 51, 129

Conread position: 143-389
Cow position: chr13:26034546-26034323 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 15, 0

Conread position: 146-400
Cow position: chr13:48580644-48580396 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 77

Conread position: 153-341
Cow position: chr13:9103266-9103082 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 48, 93

Conread position: 154-386
Cow position: chr13:57246096-57246321 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 48, 24

Conread position: 157-400
Cow position: chr13:15489883-15490117 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 17

Conread position: 160-377
Cow position: chr13:2807689-2807916 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 125

Conread position: 163-402
Cow position: chr13:62210344-62210566 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 163, 17

Conread position: 179-398
Cow position: chr13:18839444-18839659 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 44

Conread position: 189-400
Cow position: chr13:14708753-14708965 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 69

Conread position: 200-388
Cow position: chr13:46373042-46372861 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 56, 21

Conread position: 201-399
Cow position: chr13:4659669-4659475 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 201-400
Cow position: chr13:24197989-24197801 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 40

Conread position: 204-402
Cow position: chr13:13987916-13987712 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 106

Conread position: 208-400
Cow position: chr13:30951063-30950868 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 62, 39

Conread position: 210-390
Cow position: chr13:48080178-48080359 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 62, 27

Conread position: 214-400
Cow position: chr13:20876678-20876492 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 145, 43

Conread position: 220-400
Cow position: chr13:20243806-20243983 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 123, 37

Conread position: 221-390
Cow position: chr13:1364300-1364141 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 16

Conread position: 223-402
Cow position: chr13:27795821-27795995 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 227-402
Cow position: chr13:57746271-57746448 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 150
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 29, 16

Conread position: 249-402
Cow position: chr13:18541402-18541550 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 254-398
Cow position: chr13:51177602-51177746 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 266-398
Cow position: chr13:22976837-22976703 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 266-400
Cow position: chr13:3564145-3564010 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 62, 117

Conread position: 266-402
Cow position: chr13:62169957-62170092 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 277-398
Cow position: chr13:33503014-33503134 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 282-397
Cow position: chr13:39488069-39488184 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 282-400
Cow position: chr13:25877583-25877701 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 288-400
Cow position: chr13:20496476-20496364 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 292-400
Cow position: chr13:17406009-17406115 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 294-402
Cow position: chr13:12635068-12635177 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 25

Show alignments to all cow chromosomes.