Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-203 |
| Cow position: | chr14:30021005-30021202 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 133, 53 |
| Conread position: | 1-302 |
| Cow position: | chr14:19339837-19340138 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 1-303 |
| Cow position: | chr14:14835295-14835596 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 197, 70 |
| Conread position: | 1-371 |
| Cow position: | chr14:2299075-2299413 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 1-400 |
| Cow position: | chr14:10949663-10950048 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 1-400 |
| Cow position: | chr14:15011627-15012022 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 67 |
| Conread position: | 1-400 |
| Cow position: | chr14:28007459-28007072 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 1-400 |
| Cow position: | chr14:35605472-35605859 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 1-400 |
| Cow position: | chr14:41712857-41712487 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 1-400 |
| Cow position: | chr14:50650378-50650000 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 1-401 |
| Cow position: | chr14:42693488-42693116 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 3-402 |
| Cow position: | chr14:40244011-40243624 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 17 |
| Conread position: | 5-312 |
| Cow position: | chr14:46980169-46980468 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 10-383 |
| Cow position: | chr14:48415534-48415184 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 11-341 |
| Cow position: | chr14:24739084-24738755 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 11-343 |
| Cow position: | chr14:42258789-42258470 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 319, 50 |
| Conread position: | 11-400 |
| Cow position: | chr14:19734925-19735307 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 9 |
| Conread position: | 11-400 |
| Cow position: | chr14:44454281-44453903 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 11-401 |
| Cow position: | chr14:24193163-24192785 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 60 |
| Conread position: | 11-402 |
| Cow position: | chr14:37983569-37983949 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 56 |
| Conread position: | 15-287 |
| Cow position: | chr14:24783322-24783591 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 128, 53 |
| Conread position: | 27-326 |
| Cow position: | chr14:27578966-27579250 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 69-292 |
| Cow position: | chr14:27247252-27247036 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 71-401 |
| Cow position: | chr14:45151958-45152291 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 77-398 |
| Cow position: | chr14:44886330-44886006 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 77-400 |
| Cow position: | chr14:20642887-20643188 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 96 |
| Conread position: | 79-400 |
| Cow position: | chr14:34912179-34912492 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 90-383 |
| Cow position: | chr14:17556403-17556107 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 158 |
| Conread position: | 94-399 |
| Cow position: | chr14:35734903-35735202 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 95-353 |
| Cow position: | chr14:32574909-32574648 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 96-400 |
| Cow position: | chr14:22046601-22046311 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 96-401 |
| Cow position: | chr14:15813570-15813248 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 292 |
| Conread position: | 101-385 |
| Cow position: | chr14:44483203-44483474 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 122 |
| Conread position: | 104-402 |
| Cow position: | chr14:17051327-17051032 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 105-269 |
| Cow position: | chr14:25393848-25393679 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 160 |
| Conread position: | 106-400 |
| Cow position: | chr14:30134090-30134389 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 121-400 |
| Cow position: | chr14:47880384-47880663 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 129-400 |
| Cow position: | chr14:3436360-3436114 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 142-357 |
| Cow position: | chr14:15662509-15662723 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 143-400 |
| Cow position: | chr14:25994312-25994563 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 146-400 |
| Cow position: | chr14:30762366-30762130 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 146-400 |
| Cow position: | chr14:38722573-38722328 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 74 |
| Conread position: | 147-336 |
| Cow position: | chr14:9500206-9500384 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 147-400 |
| Cow position: | chr14:25448081-25447854 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 149-397 |
| Cow position: | chr14:19399569-19399327 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 149-400 |
| Cow position: | chr14:32903930-32904175 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 166-400 |
| Cow position: | chr14:36420352-36420579 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 75 |
| Conread position: | 173-328 |
| Cow position: | chr14:23938579-23938734 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 174-400 |
| Cow position: | chr14:38000079-37999864 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 182-398 |
| Cow position: | chr14:35685426-35685638 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 191-349 |
| Cow position: | chr14:44771739-44771588 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 198-400 |
| Cow position: | chr14:3589264-3589451 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 199-400 |
| Cow position: | chr14:17462951-17462755 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 203-398 |
| Cow position: | chr14:44023918-44023730 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 219-400 |
| Cow position: | chr14:38413119-38412945 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 159, 24 |
| Conread position: | 224-400 |
| Cow position: | chr14:5255624-5255445 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 225-393 |
| Cow position: | chr14:13835729-13835889 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 225-400 |
| Cow position: | chr14:44787488-44787312 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 242-402 |
| Cow position: | chr14:31810283-31810125 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 243-400 |
| Cow position: | chr14:29481202-29481360 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 133 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 245-400 |
| Cow position: | chr14:33999527-33999680 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 64 |
| Conread position: | 268-396 |
| Cow position: | chr14:32581702-32581831 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 268-400 |
| Cow position: | chr14:14279665-14279803 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 271-398 |
| Cow position: | chr14:29568014-29567886 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 272-400 |
| Cow position: | chr14:28574810-28574682 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 275-371 |
| Cow position: | chr14:45019094-45019190 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-398 |
| Cow position: | chr14:14573515-14573637 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 278-400 |
| Cow position: | chr14:21864581-21864694 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.