Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-274 |
| Cow position: | chr15:27971910-27971645 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 1-354 |
| Cow position: | chr15:37470099-37469749 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 1-400 |
| Cow position: | chr15:23265652-23266030 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 1-400 |
| Cow position: | chr15:25683558-25683953 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 60 |
| Conread position: | 1-400 |
| Cow position: | chr15:53712706-53713093 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 2-221 |
| Cow position: | chr15:9072567-9072779 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 2-399 |
| Cow position: | chr15:53728408-53728024 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 43 |
| Conread position: | 3-400 |
| Cow position: | chr15:31935397-31935787 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 3-402 |
| Cow position: | chr15:6523568-6523189 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 72 |
| Conread position: | 8-400 |
| Cow position: | chr15:17642082-17642449 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 8-402 |
| Cow position: | chr15:3582179-3581799 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 9-247 |
| Cow position: | chr15:45665511-45665747 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 9-399 |
| Cow position: | chr15:2436989-2437354 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 11-254 |
| Cow position: | chr15:26754909-26755141 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 11-382 |
| Cow position: | chr15:12048862-12048507 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 11-398 |
| Cow position: | chr15:18403808-18404170 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 11-400 |
| Cow position: | chr15:37633243-37633620 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 11-401 |
| Cow position: | chr15:14811055-14810682 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 13-382 |
| Cow position: | chr15:11997626-11997994 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 57 |
| Conread position: | 13-402 |
| Cow position: | chr15:578931-579303 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 20-400 |
| Cow position: | chr15:19813609-19813245 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 42 |
| Conread position: | 20-400 |
| Cow position: | chr15:31855354-31855729 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 41 |
| Conread position: | 25-373 |
| Cow position: | chr15:38902566-38902244 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 217, 58 |
| Conread position: | 26-400 |
| Cow position: | chr15:16669537-16669169 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 28-231 |
| Cow position: | chr15:41344168-41343975 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 29-384 |
| Cow position: | chr15:1887968-1888311 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 30-313 |
| Cow position: | chr15:35042276-35042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 46 |
| Conread position: | 30-400 |
| Cow position: | chr15:4622870-4622521 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 30-400 |
| Cow position: | chr15:49279589-49279210 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 39-383 |
| Cow position: | chr15:44797366-44797028 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 58-400 |
| Cow position: | chr15:52868737-52869073 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 60-400 |
| Cow position: | chr15:26866770-26867084 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 69-286 |
| Cow position: | chr15:26365341-26365556 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 65, 172 |
| Conread position: | 72-400 |
| Cow position: | chr15:30570064-30570396 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 73-383 |
| Cow position: | chr15:10581337-10581643 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 76-324 |
| Cow position: | chr15:34551860-34552110 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 90-398 |
| Cow position: | chr15:7443963-7443674 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 55 |
| Conread position: | 92-332 |
| Cow position: | chr15:36864611-36864368 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 13, 149 |
| Conread position: | 95-385 |
| Cow position: | chr15:12283122-12283405 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 96-400 |
| Cow position: | chr15:8630290-8630588 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 151 |
| Conread position: | 96-400 |
| Cow position: | chr15:16972189-16971892 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 112 |
| Conread position: | 96-400 |
| Cow position: | chr15:52131791-52132095 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 101-400 |
| Cow position: | chr15:21802506-21802795 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 105-397 |
| Cow position: | chr15:9437460-9437748 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 123-311 |
| Cow position: | chr15:36582578-36582393 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 133-402 |
| Cow position: | chr15:9428038-9427751 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 136-400 |
| Cow position: | chr15:5912396-5912129 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 141-402 |
| Cow position: | chr15:39809503-39809763 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 146-398 |
| Cow position: | chr15:11287388-11287132 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 147-342 |
| Cow position: | chr15:1892182-1891991 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 149-400 |
| Cow position: | chr15:28608172-28607915 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 158-384 |
| Cow position: | chr15:14610240-14610006 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 158-400 |
| Cow position: | chr15:582853-583099 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 158-400 |
| Cow position: | chr15:16989509-16989747 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 159-400 |
| Cow position: | chr15:40065906-40066144 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 163-305 |
| Cow position: | chr15:39360161-39360017 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 163-369 |
| Cow position: | chr15:53335368-53335578 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 172-400 |
| Cow position: | chr15:50243321-50243539 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 173-400 |
| Cow position: | chr15:21182024-21182250 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 174-400 |
| Cow position: | chr15:13081342-13081576 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 49 |
| Conread position: | 192-386 |
| Cow position: | chr15:6347745-6347940 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 77, 151 |
| Conread position: | 193-400 |
| Cow position: | chr15:49271986-49272186 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 194-400 |
| Cow position: | chr15:31917665-31917468 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 214-373 |
| Cow position: | chr15:26594385-26594220 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 218-400 |
| Cow position: | chr15:35067005-35067187 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-400 |
| Cow position: | chr15:41807447-41807286 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 139 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 246-400 |
| Cow position: | chr15:9075427-9075576 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 247-400 |
| Cow position: | chr15:36278090-36277940 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 250-402 |
| Cow position: | chr15:29337770-29337618 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-398 |
| Cow position: | chr15:1992771-1992910 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-400 |
| Cow position: | chr15:37491608-37491480 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 266-398 |
| Cow position: | chr15:16455841-16455709 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 271-398 |
| Cow position: | chr15:21417464-21417592 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 275-400 |
| Cow position: | chr15:51637291-51637166 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-400 |
| Cow position: | chr15:27971607-27971492 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 296-400 |
| Cow position: | chr15:39357375-39357271 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.