Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-206 |
| Cow position: | chr16:31374976-31374780 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-241 |
| Cow position: | chr16:47391238-47391462 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 1-275 |
| Cow position: | chr16:42406054-42406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 1-397 |
| Cow position: | chr16:41680569-41680178 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 1-400 |
| Cow position: | chr16:14799544-14799155 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 64 |
| Conread position: | 1-400 |
| Cow position: | chr16:30572429-30572041 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 63 |
| Conread position: | 1-400 |
| Cow position: | chr16:43850627-43850243 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chr16:47781497-47781888 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 1-400 |
| Cow position: | chr16:48894622-48894240 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 48 |
| Conread position: | 1-402 |
| Cow position: | chr16:22785841-22785457 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 3-398 |
| Cow position: | chr16:4295322-4294947 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 72 |
| Conread position: | 8-251 |
| Cow position: | chr16:55910174-55909931 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 8-400 |
| Cow position: | chr16:45057608-45057995 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 68 |
| Conread position: | 9-196 |
| Cow position: | chr16:29204846-29204670 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 10-400 |
| Cow position: | chr16:12243343-12242967 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 11-254 |
| Cow position: | chr16:16608018-16608254 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 15-383 |
| Cow position: | chr16:15509142-15509499 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 54 |
| Conread position: | 15-400 |
| Cow position: | chr16:3742933-3742540 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 15-400 |
| Cow position: | chr16:23035088-23034713 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 16-400 |
| Cow position: | chr16:13044053-13044432 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 31-326 |
| Cow position: | chr16:9703387-9703097 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 50-235 |
| Cow position: | chr16:44599084-44599275 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 60-400 |
| Cow position: | chr16:45552252-45552584 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 269, 72 |
| Conread position: | 70-402 |
| Cow position: | chr16:16118713-16119047 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 71-393 |
| Cow position: | chr16:2371542-2371237 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 77-397 |
| Cow position: | chr16:52650256-52649936 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 168 |
| Conread position: | 77-400 |
| Cow position: | chr16:23878606-23878946 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 194 |
| Conread position: | 78-293 |
| Cow position: | chr16:43741838-43741633 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 91-402 |
| Cow position: | chr16:23301612-23301920 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 93-400 |
| Cow position: | chr16:48604511-48604217 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 81 |
| Conread position: | 100-400 |
| Cow position: | chr16:43850221-43849935 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 104-397 |
| Cow position: | chr16:37441623-37441331 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 123 |
| Conread position: | 104-400 |
| Cow position: | chr16:56373588-56373297 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 136 |
| Conread position: | 113-402 |
| Cow position: | chr16:30109531-30109247 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 126 |
| Conread position: | 122-400 |
| Cow position: | chr16:24038396-24038683 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 124-325 |
| Cow position: | chr16:37526963-37527162 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 124-379 |
| Cow position: | chr16:14423215-14423468 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 131-298 |
| Cow position: | chr16:608569-608402 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 112 |
| Conread position: | 133-400 |
| Cow position: | chr16:2722729-2722458 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 136-397 |
| Cow position: | chr16:37508406-37508663 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 146-400 |
| Cow position: | chr16:4854632-4854389 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 147-400 |
| Cow position: | chr16:26075174-26075436 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 158-400 |
| Cow position: | chr16:31374563-31374320 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 161-397 |
| Cow position: | chr16:12473985-12474228 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 168-400 |
| Cow position: | chr16:32352471-32352700 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 183-400 |
| Cow position: | chr16:53547243-53547032 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 184-400 |
| Cow position: | chr16:14444548-14444758 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 189-344 |
| Cow position: | chr16:29204513-29204357 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 189-398 |
| Cow position: | chr16:14084775-14084567 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 51 |
| Conread position: | 194-397 |
| Cow position: | chr16:17365469-17365672 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 201-400 |
| Cow position: | chr16:5131391-5131197 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 202-402 |
| Cow position: | chr16:13209718-13209904 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 205-400 |
| Cow position: | chr16:17219056-17218876 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 207-402 |
| Cow position: | chr16:51456715-51456902 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 160, 35 |
| Conread position: | 209-400 |
| Cow position: | chr16:52813521-52813349 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 215-389 |
| Cow position: | chr16:19446003-19446164 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 234-398 |
| Cow position: | chr16:53516233-53516064 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 248-398 |
| Cow position: | chr16:24635107-24634958 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 253-400 |
| Cow position: | chr16:10198429-10198576 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 258-398 |
| Cow position: | chr16:38397896-38397755 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 259-383 |
| Cow position: | chr16:16622412-16622294 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 260-398 |
| Cow position: | chr16:26106598-26106734 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 264-400 |
| Cow position: | chr16:37024801-37024669 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 266-400 |
| Cow position: | chr16:27075611-27075747 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 267-400 |
| Cow position: | chr16:52731576-52731703 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 277-400 |
| Cow position: | chr16:33674605-33674480 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 283-400 |
| Cow position: | chr16:16163264-16163145 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 292-400 |
| Cow position: | chr16:14824504-14824397 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.