Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-235 |
| Cow position: | chr17:20208585-20208345 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 1-273 |
| Cow position: | chr17:25117208-25117472 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 1-400 |
| Cow position: | chr17:28847421-28847021 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 1-400 |
| Cow position: | chr17:32451430-32451029 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 9-400 |
| Cow position: | chr17:6980506-6980119 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 54 |
| Conread position: | 9-400 |
| Cow position: | chr17:27622668-27622289 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 9-402 |
| Cow position: | chr17:43143557-43143163 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 11-400 |
| Cow position: | chr17:18417997-18417610 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 57 |
| Conread position: | 12-400 |
| Cow position: | chr17:12842503-12842890 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 25-398 |
| Cow position: | chr17:2735978-2736338 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 25-399 |
| Cow position: | chr17:7210882-7211237 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 61-351 |
| Cow position: | chr17:3849019-3849306 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 75-343 |
| Cow position: | chr17:30358223-30357976 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 78-325 |
| Cow position: | chr17:1309954-1309709 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 54 |
| Conread position: | 80-393 |
| Cow position: | chr17:13703607-13703913 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 84-344 |
| Cow position: | chr17:30330646-30330889 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 90-389 |
| Cow position: | chr17:701712-702010 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 91-402 |
| Cow position: | chr17:34319832-34319506 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 96-400 |
| Cow position: | chr17:11225507-11225808 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 64 |
| Conread position: | 101-398 |
| Cow position: | chr17:19789541-19789255 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 103-383 |
| Cow position: | chr17:3096052-3096335 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 122-277 |
| Cow position: | chr17:36149762-36149914 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 141-402 |
| Cow position: | chr17:3223728-3223975 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 142-400 |
| Cow position: | chr17:17500982-17500741 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 147-399 |
| Cow position: | chr17:15450871-15451115 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 193 |
| Conread position: | 154-401 |
| Cow position: | chr17:10261491-10261736 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 160-400 |
| Cow position: | chr17:12306570-12306803 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 160, 33 |
| Conread position: | 160-400 |
| Cow position: | chr17:33271393-33271155 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 172-398 |
| Cow position: | chr17:404255-404488 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 175-400 |
| Cow position: | chr17:10850948-10850732 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 183-400 |
| Cow position: | chr17:26481230-26481447 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 80 |
| Conread position: | 198-400 |
| Cow position: | chr17:4625191-4625385 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 201-400 |
| Cow position: | chr17:41899173-41898979 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 174, 52 |
| Conread position: | 203-392 |
| Cow position: | chr17:35149083-35148883 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 206-368 |
| Cow position: | chr17:37166541-37166393 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 80, 48 |
| Conread position: | 230-402 |
| Cow position: | chr17:19447332-19447162 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 243-400 |
| Cow position: | chr17:13235979-13236137 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 253-402 |
| Cow position: | chr17:14780022-14780169 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 256-396 |
| Cow position: | chr17:1364604-1364466 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 259-400 |
| Cow position: | chr17:26630727-26630588 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 262-398 |
| Cow position: | chr17:37722664-37722528 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-400 |
| Cow position: | chr17:10436861-10436728 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 269-396 |
| Cow position: | chr17:34322502-34322371 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 270-397 |
| Cow position: | chr17:39456563-39456685 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 277-400 |
| Cow position: | chr17:25117576-25117699 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 292-400 |
| Cow position: | chr17:3797790-3797898 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-400 |
| Cow position: | chr17:45212548-45212444 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.