Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-153 |
| Cow position: | chr18:48550148-48550296 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 135, 62 |
| Conread position: | 1-287 |
| Cow position: | chr18:35471633-35471355 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 204, 12 |
| Conread position: | 1-402 |
| Cow position: | chr18:32860820-32861206 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 3-396 |
| Cow position: | chr18:28085740-28086127 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 67 |
| Conread position: | 6-241 |
| Cow position: | chr18:33610063-33610306 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 134, 62 |
| Conread position: | 9-240 |
| Cow position: | chr18:33896009-33896238 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 52 |
| Conread position: | 10-397 |
| Cow position: | chr18:17228086-17227715 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 126, 60 |
| Conread position: | 11-198 |
| Cow position: | chr18:14480609-14480787 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 11-236 |
| Cow position: | chr18:37493230-37493450 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 54 |
| Conread position: | 11-375 |
| Cow position: | chr18:53028887-53029233 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 75 |
| Conread position: | 11-400 |
| Cow position: | chr18:50880657-50881041 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 12-380 |
| Cow position: | chr18:5060378-5060002 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 153, 57 |
| Conread position: | 14-398 |
| Cow position: | chr18:39475097-39474715 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 15 |
| Conread position: | 15-402 |
| Cow position: | chr18:1700771-1701138 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 20-400 |
| Cow position: | chr18:16259445-16259819 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 22-224 |
| Cow position: | chr18:21290587-21290390 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 29-398 |
| Cow position: | chr18:22433596-22433235 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 39 |
| Conread position: | 33-245 |
| Cow position: | chr18:16147961-16147752 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 106, 29 |
| Conread position: | 36-400 |
| Cow position: | chr18:25846829-25846483 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 31 |
| Conread position: | 68-398 |
| Cow position: | chr18:29081236-29081563 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 75-400 |
| Cow position: | chr18:22065135-22064827 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 76-248 |
| Cow position: | chr18:16539144-16539321 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 77-400 |
| Cow position: | chr18:53047825-53047504 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 77-402 |
| Cow position: | chr18:24664209-24663892 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 85-338 |
| Cow position: | chr18:23316537-23316280 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 158 |
| Conread position: | 115-400 |
| Cow position: | chr18:21123250-21122977 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 122-399 |
| Cow position: | chr18:50242338-50242610 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 133-398 |
| Cow position: | chr18:22099868-22099603 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 5, 94 |
| Conread position: | 142-298 |
| Cow position: | chr18:33146906-33147063 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 102 |
| Conread position: | 153-399 |
| Cow position: | chr18:49436659-49436904 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 158-344 |
| Cow position: | chr18:55748960-55748772 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 163-400 |
| Cow position: | chr18:48952585-48952817 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 169-400 |
| Cow position: | chr18:27405214-27405438 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 173-400 |
| Cow position: | chr18:19213548-19213308 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 180-398 |
| Cow position: | chr18:24645092-24644877 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 12 |
| Conread position: | 181-402 |
| Cow position: | chr18:1129237-1129449 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 213, 39 |
| Conread position: | 195-386 |
| Cow position: | chr18:51331945-51332133 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 200-400 |
| Cow position: | chr18:36456395-36456592 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 201-351 |
| Cow position: | chr18:8170778-8170928 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 201-374 |
| Cow position: | chr18:39500897-39500721 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 201-397 |
| Cow position: | chr18:26866195-26866385 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 201-398 |
| Cow position: | chr18:54629054-54628856 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 201-400 |
| Cow position: | chr18:12078747-12078548 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 201-402 |
| Cow position: | chr18:52870968-52871164 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 216-400 |
| Cow position: | chr18:1195844-1196024 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 243-400 |
| Cow position: | chr18:1740725-1740567 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 252-397 |
| Cow position: | chr18:26667688-26667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 54, 5 |
| Conread position: | 258-400 |
| Cow position: | chr18:32371709-32371570 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 264-392 |
| Cow position: | chr18:20222948-20222818 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 266-370 |
| Cow position: | chr18:31394189-31394292 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 275-398 |
| Cow position: | chr18:35471134-35471011 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 275-400 |
| Cow position: | chr18:32286652-32286774 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 103, 49 |
| Conread position: | 301-400 |
| Cow position: | chr18:23503386-23503289 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.