Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-162 |
| Cow position: | chr19:30452343-30452194 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-398 |
| Cow position: | chr19:426088-425733 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 132, 51 |
| Conread position: | 1-400 |
| Cow position: | chr19:3082268-3082675 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 19 |
| Conread position: | 1-400 |
| Cow position: | chr19:17439899-17439537 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 1-400 |
| Cow position: | chr19:30746599-30746996 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 61 |
| Conread position: | 6-370 |
| Cow position: | chr19:30188596-30188236 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 8-333 |
| Cow position: | chr19:51070686-51070374 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 128, 61 |
| Conread position: | 9-320 |
| Cow position: | chr19:49483946-49484249 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 101, 59 |
| Conread position: | 10-400 |
| Cow position: | chr19:4600705-4601079 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 50 |
| Conread position: | 11-400 |
| Cow position: | chr19:30051800-30051435 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 59 |
| Conread position: | 20-400 |
| Cow position: | chr19:28560617-28560234 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 159 |
| Conread position: | 60-400 |
| Cow position: | chr19:47772255-47772595 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 63-353 |
| Cow position: | chr19:22670621-22670331 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 76-400 |
| Cow position: | chr19:25846568-25846881 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 78-400 |
| Cow position: | chr19:6362540-6362861 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 86-331 |
| Cow position: | chr19:19242336-19242586 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 89-400 |
| Cow position: | chr19:55898311-55898611 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 101-400 |
| Cow position: | chr19:28606078-28605777 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 105-252 |
| Cow position: | chr19:33954976-33955125 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 55 |
| Conread position: | 105-398 |
| Cow position: | chr19:4548373-4548079 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 105-400 |
| Cow position: | chr19:30880099-30880393 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 80 |
| Conread position: | 116-400 |
| Cow position: | chr19:36388635-36388365 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 127-342 |
| Cow position: | chr19:20700634-20700850 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 141-384 |
| Cow position: | chr19:13448480-13448724 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 144-400 |
| Cow position: | chr19:55418379-55418621 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 145-334 |
| Cow position: | chr19:50843598-50843774 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 146-400 |
| Cow position: | chr19:6478494-6478238 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 146-402 |
| Cow position: | chr19:41504291-41504546 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 154-400 |
| Cow position: | chr19:55125210-55125455 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 99, 221 |
| Conread position: | 161-378 |
| Cow position: | chr19:35026832-35026617 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 180-400 |
| Cow position: | chr19:30385125-30385345 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 186-360 |
| Cow position: | chr19:36479200-36479365 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 201-400 |
| Cow position: | chr19:17282590-17282389 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 201-400 |
| Cow position: | chr19:30451651-30451474 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 201-400 |
| Cow position: | chr19:33590099-33590297 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 207-400 |
| Cow position: | chr19:14534093-14533903 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 219-400 |
| Cow position: | chr19:39299502-39299322 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 224-400 |
| Cow position: | chr19:12478148-12477971 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 224-400 |
| Cow position: | chr19:35826802-35826977 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 147 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 141, 19 |
| Conread position: | 249-372 |
| Cow position: | chr19:12130796-12130672 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 249-398 |
| Cow position: | chr19:41554684-41554829 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 249-400 |
| Cow position: | chr19:3631108-3631251 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 265-400 |
| Cow position: | chr19:33847812-33847949 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 266-400 |
| Cow position: | chr19:30148031-30147893 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 267-400 |
| Cow position: | chr19:4500488-4500353 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 268-400 |
| Cow position: | chr19:7323238-7323106 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 270-400 |
| Cow position: | chr19:33955205-33955336 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 272-398 |
| Cow position: | chr19:17260811-17260936 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 80 |
| Conread position: | 282-401 |
| Cow position: | chr19:21023430-21023551 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 288-400 |
| Cow position: | chr19:51070079-51069972 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 289-400 |
| Cow position: | chr19:37601694-37601584 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.