Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-216
Cow position: chr2:37003499-37003707 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 130, 19

Conread position: 1-372
Cow position: chr2:32393606-32393947 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 52, 61

Conread position: 1-383
Cow position: chr2:53716778-53716419 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 67

Conread position: 1-398
Cow position: chr2:21697526-21697140 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 1-398
Cow position: chr2:43345089-43344700 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 22

Conread position: 1-400
Cow position: chr2:3182310-3181928 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 65

Conread position: 1-400
Cow position: chr2:7211997-7212381 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 38

Conread position: 1-401
Cow position: chr2:47746425-47746808 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 52

Conread position: 1-402
Cow position: chr2:13048416-13048797 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 69

Conread position: 2-328
Cow position: chr2:20281687-20282011 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 34

Conread position: 9-348
Cow position: chr2:9242916-9243236 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 14, 62

Conread position: 9-400
Cow position: chr2:7779271-7778899 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 45

Conread position: 9-400
Cow position: chr2:74848052-74848456 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 51

Conread position: 10-396
Cow position: chr2:62563781-62563410 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 278
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 77

Conread position: 10-398
Cow position: chr2:74387909-74387541 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 56

Conread position: 10-402
Cow position: chr2:9043403-9043785 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 58

Conread position: 11-400
Cow position: chr2:4830610-4830246 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 24, 61

Conread position: 11-400
Cow position: chr2:14037496-14037136 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 55

Conread position: 12-400
Cow position: chr2:33791270-33790894 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 43

Conread position: 13-398
Cow position: chr2:72599034-72599402 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 47

Conread position: 15-290
Cow position: chr2:42286283-42286019 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 121, 53

Conread position: 15-383
Cow position: chr2:41490849-41491212 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 31

Conread position: 15-400
Cow position: chr2:82828152-82827791 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 19

Conread position: 20-400
Cow position: chr2:4927849-4927488 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 271
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 116, 40

Conread position: 20-400
Cow position: chr2:39196548-39196199 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 168, 39

Conread position: 24-247
Cow position: chr2:62674024-62673816 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 37

Conread position: 43-326
Cow position: chr2:57501474-57501744 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 131, 23

Conread position: 69-371
Cow position: chr2:4478052-4478367 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 69, 0

Conread position: 72-390
Cow position: chr2:39411904-39412225 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 64, 186

Conread position: 72-398
Cow position: chr2:23062653-23062336 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 10

Conread position: 72-400
Cow position: chr2:68962832-68962522 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 236
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 91

Conread position: 74-402
Cow position: chr2:62463739-62463402 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 75

Conread position: 75-400
Cow position: chr2:3544332-3544011 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 10

Conread position: 78-305
Cow position: chr2:77968241-77968015 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 57, 7

Conread position: 78-397
Cow position: chr2:52347504-52347190 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 81-400
Cow position: chr2:23811402-23811687 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 55, 87

Conread position: 81-400
Cow position: chr2:63287874-63287567 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 38

Conread position: 90-371
Cow position: chr2:80604052-80603768 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 158

Conread position: 91-400
Cow position: chr2:5767756-5767464 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 114, 41

Conread position: 93-400
Cow position: chr2:10566604-10566889 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 149, 49

Conread position: 99-398
Cow position: chr2:7365932-7365639 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 27

Conread position: 114-400
Cow position: chr2:13684901-13685178 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 110

Conread position: 114-400
Cow position: chr2:52183256-52183536 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 128

Conread position: 118-402
Cow position: chr2:40370460-40370189 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 127

Conread position: 121-362
Cow position: chr2:44983360-44983117 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 119

Conread position: 122-400
Cow position: chr2:18274356-18274078 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 122-400
Cow position: chr2:69982679-69982944 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 66

Conread position: 124-302
Cow position: chr2:76055077-76054902 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 23

Conread position: 124-402
Cow position: chr2:56823013-56822743 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 60, 10

Conread position: 128-400
Cow position: chr2:41417915-41417650 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 98

Conread position: 133-400
Cow position: chr2:46130610-46130343 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 112

Conread position: 135-400
Cow position: chr2:31420318-31420589 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 141-352
Cow position: chr2:38583592-38583378 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 65, 88

Conread position: 141-400
Cow position: chr2:19750663-19750918 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 64, 22

Conread position: 142-402
Cow position: chr2:11736740-11736990 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 39

Conread position: 143-397
Cow position: chr2:27782847-27782588 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 62, 76

Conread position: 143-400
Cow position: chr2:18759830-18760071 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 113, 43

Conread position: 145-398
Cow position: chr2:45680938-45681198 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 112, 0

Conread position: 146-364
Cow position: chr2:3730445-3730660 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 59, 77

Conread position: 146-402
Cow position: chr2:49441170-49441419 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 22

Conread position: 147-397
Cow position: chr2:12777233-12776991 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 76

Conread position: 151-386
Cow position: chr2:19130497-19130722 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 89, 0

Conread position: 151-401
Cow position: chr2:15273539-15273300 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 58, 93

Conread position: 154-401
Cow position: chr2:9709807-9710052 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 35, 40

Conread position: 160-384
Cow position: chr2:47962629-47962419 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 54

Conread position: 163-398
Cow position: chr2:38805999-38805765 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 76

Conread position: 168-352
Cow position: chr2:18249249-18249075 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 72

Conread position: 186-400
Cow position: chr2:51826787-51826586 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 23, 37

Conread position: 194-400
Cow position: chr2:25112522-25112720 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 7, 23

Conread position: 204-400
Cow position: chr2:53280772-53280970 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 53, 39

Conread position: 207-400
Cow position: chr2:43000887-43000705 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 35

Conread position: 208-398
Cow position: chr2:20534229-20534042 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 83, 38

Conread position: 211-387
Cow position: chr2:73205032-73204857 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 32, 0

Conread position: 223-400
Cow position: chr2:78912392-78912218 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 53, 14

Conread position: 243-398
Cow position: chr2:16522031-16522186 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 137

Conread position: 243-398
Cow position: chr2:54468939-54468784 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 104

Conread position: 247-397
Cow position: chr2:12910623-12910774 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 254-400
Cow position: chr2:59592562-59592417 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 259-402
Cow position: chr2:36213904-36213762 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 0

Conread position: 264-396
Cow position: chr2:45470940-45471075 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 266-400
Cow position: chr2:71121693-71121827 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 267-400
Cow position: chr2:9412416-9412550 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 69, 25

Conread position: 270-401
Cow position: chr2:6837085-6836947 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 271-398
Cow position: chr2:37155547-37155422 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 108
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 74, 0

Conread position: 277-400
Cow position: chr2:56017760-56017635 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 286-401
Cow position: chr2:30906360-30906244 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 297-400
Cow position: chr2:29410991-29411094 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 12

Conread position: 320-400
Cow position: chr2:77968038-77967958 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 72
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.