Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-196 |
| Cow position: | chr20:17474535-17474344 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 1-216 |
| Cow position: | chr20:26993015-26993226 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 135, 12 |
| Conread position: | 1-284 |
| Cow position: | chr20:36707215-36706943 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 1-286 |
| Cow position: | chr20:27977464-27977186 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 1-342 |
| Cow position: | chr20:10722581-10722888 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 1-354 |
| Cow position: | chr20:27844257-27844615 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 1-389 |
| Cow position: | chr20:22919928-22919537 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 1-400 |
| Cow position: | chr20:13588920-13588523 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 1-400 |
| Cow position: | chr20:31563730-31563348 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 13 |
| Conread position: | 1-402 |
| Cow position: | chr20:15147744-15147361 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 68 |
| Conread position: | 8-373 |
| Cow position: | chr20:13790241-13790601 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 8-400 |
| Cow position: | chr20:22420546-22420171 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 11-167 |
| Cow position: | chr20:16585377-16585228 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 11-187 |
| Cow position: | chr20:12119357-12119187 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 11-261 |
| Cow position: | chr20:4851422-4851661 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 15-325 |
| Cow position: | chr20:24280226-24280517 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 122, 55 |
| Conread position: | 20-400 |
| Cow position: | chr20:14864598-14864238 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 40 |
| Conread position: | 24-322 |
| Cow position: | chr20:9918729-9919027 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 68-400 |
| Cow position: | chr20:33154678-33154349 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 141 |
| Conread position: | 70-400 |
| Cow position: | chr20:5668485-5668145 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 227 |
| Conread position: | 70-401 |
| Cow position: | chr20:3377002-3376673 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 71-392 |
| Cow position: | chr20:4874881-4874561 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 172 |
| Conread position: | 73-326 |
| Cow position: | chr20:35249289-35249028 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 10, 178 |
| Conread position: | 74-400 |
| Cow position: | chr20:21002238-21001920 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 143 |
| Conread position: | 85-400 |
| Cow position: | chr20:21847584-21847275 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 117, 57 |
| Conread position: | 100-402 |
| Cow position: | chr20:20350455-20350161 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 101-390 |
| Cow position: | chr20:31098044-31098329 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 104-400 |
| Cow position: | chr20:21415326-21415034 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 122-400 |
| Cow position: | chr20:23422006-23421733 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 124-400 |
| Cow position: | chr20:30285722-30285994 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 143-399 |
| Cow position: | chr20:21403550-21403803 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 59, 78 |
| Conread position: | 145-370 |
| Cow position: | chr20:7284236-7284456 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 158-400 |
| Cow position: | chr20:23400676-23400905 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 160-400 |
| Cow position: | chr20:7801733-7801503 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 160-400 |
| Cow position: | chr20:36988200-36987962 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 48 |
| Conread position: | 163-398 |
| Cow position: | chr20:2858742-2858968 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 169-371 |
| Cow position: | chr20:20072147-20071943 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 169-400 |
| Cow position: | chr20:2609133-2609361 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 186-398 |
| Cow position: | chr20:20064235-20064023 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 186-402 |
| Cow position: | chr20:887345-887560 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 7, 61 |
| Conread position: | 192-400 |
| Cow position: | chr20:30243644-30243835 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 195-400 |
| Cow position: | chr20:33601907-33601704 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 201-398 |
| Cow position: | chr20:21301030-21300837 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 201-400 |
| Cow position: | chr20:36373832-36373632 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 204-398 |
| Cow position: | chr20:16582845-16582657 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 204-400 |
| Cow position: | chr20:17473153-17472961 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 243-399 |
| Cow position: | chr20:12118537-12118378 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 246-400 |
| Cow position: | chr20:13448579-13448426 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 266-399 |
| Cow position: | chr20:4851792-4851924 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 266-400 |
| Cow position: | chr20:28021274-28021412 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 267-398 |
| Cow position: | chr20:13252888-13252755 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-400 |
| Cow position: | chr20:15492284-15492417 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 86, 79 |
| Conread position: | 268-400 |
| Cow position: | chr20:8982727-8982595 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 269-390 |
| Cow position: | chr20:39199901-39199776 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 275-375 |
| Cow position: | chr20:25991200-25991100 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 275-400 |
| Cow position: | chr20:9036093-9035964 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 275-400 |
| Cow position: | chr20:9071389-9071263 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 276-399 |
| Cow position: | chr20:36706833-36706711 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 276-400 |
| Cow position: | chr20:12149263-12149136 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 277-402 |
| Cow position: | chr20:27976960-27976836 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.