Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-286
Cow position: chr21:25019129-25019398 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 58

Conread position: 1-286
Cow position: chr21:40442351-40442074 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 7

Conread position: 1-384
Cow position: chr21:23399217-23399595 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 19

Conread position: 1-396
Cow position: chr21:26632193-26631817 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 8

Conread position: 1-398
Cow position: chr21:1991545-1991925 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 58

Conread position: 1-398
Cow position: chr21:29943168-29943552 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 259
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 57

Conread position: 1-400
Cow position: chr21:45962658-45963049 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 69

Conread position: 2-132
Cow position: chr21:33974754-33974887 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 64

Conread position: 11-366
Cow position: chr21:12756192-12756551 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 110

Conread position: 11-400
Cow position: chr21:45447860-45448232 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 50

Conread position: 12-201
Cow position: chr21:8273266-8273085 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 122, 51

Conread position: 12-286
Cow position: chr21:37941219-37940967 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 148, 50

Conread position: 13-400
Cow position: chr21:26742229-26741876 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 63

Conread position: 15-240
Cow position: chr21:24972331-24972115 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 119, 19

Conread position: 15-400
Cow position: chr21:15543679-15543306 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 20-252
Cow position: chr21:37341876-37341648 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 120, 49

Conread position: 20-398
Cow position: chr21:9976448-9976830 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 283
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 116, 61

Conread position: 20-400
Cow position: chr21:6667477-6667840 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 44

Conread position: 64-398
Cow position: chr21:28709081-28709429 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 98

Conread position: 68-397
Cow position: chr21:39075160-39074836 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 75

Conread position: 70-329
Cow position: chr21:37355992-37356236 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 66, 24

Conread position: 71-398
Cow position: chr21:23286317-23285999 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 15

Conread position: 74-401
Cow position: chr21:22941698-22942025 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 167

Conread position: 90-400
Cow position: chr21:26579645-26579955 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 19

Conread position: 101-388
Cow position: chr21:27521067-27520771 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 35, 120

Conread position: 108-381
Cow position: chr21:29644001-29643719 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 114

Conread position: 110-298
Cow position: chr21:3614385-3614578 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 13, 51

Conread position: 113-334
Cow position: chr21:5994614-5994397 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 30, 134

Conread position: 114-328
Cow position: chr21:16679151-16679363 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 120-400
Cow position: chr21:12079590-12079861 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 19

Conread position: 121-400
Cow position: chr21:38021269-38021541 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 15, 30

Conread position: 122-398
Cow position: chr21:17672007-17671737 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 14, 34

Conread position: 143-398
Cow position: chr21:37282918-37283160 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 62, 15

Conread position: 145-400
Cow position: chr21:42396379-42396631 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 59, 95

Conread position: 172-402
Cow position: chr21:30567541-30567320 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 37, 72

Conread position: 174-400
Cow position: chr21:37170181-37170412 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 70, 46

Conread position: 179-371
Cow position: chr21:33975069-33975266 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 40

Conread position: 185-400
Cow position: chr21:6282363-6282569 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 17, 55

Conread position: 192-399
Cow position: chr21:27089519-27089305 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 17, 0

Conread position: 193-398
Cow position: chr21:16166215-16166004 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 146

Conread position: 201-400
Cow position: chr21:6151340-6151542 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 19

Conread position: 204-398
Cow position: chr21:39766401-39766587 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 77, 33

Conread position: 207-398
Cow position: chr21:27678472-27678661 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 225-397
Cow position: chr21:28650820-28650990 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 143
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 33, 18

Conread position: 238-397
Cow position: chr21:45286285-45286133 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 249-400
Cow position: chr21:39527384-39527532 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 121, 7

Conread position: 249-402
Cow position: chr21:454814-454960 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 262-400
Cow position: chr21:5487044-5487183 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 264-400
Cow position: chr21:24972114-24971978 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 267-398
Cow position: chr21:3649001-3648868 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 275-400
Cow position: chr21:1506980-1507105 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 275-400
Cow position: chr21:8719125-8718997 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 90

Conread position: 276-398
Cow position: chr21:5588907-5588786 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 276-398
Cow position: chr21:5597872-5597988 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 276-402
Cow position: chr21:25019523-25019649 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 107
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 280-394
Cow position: chr21:3614619-3614730 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 284-400
Cow position: chr21:40441885-40441770 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.