Cow genome map
Conread name: | rcte04_l7.y1 |
Conread position: | 1-286 |
Cow position: | chr21:25019129-25019398 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 58 |
Conread position: | 1-286 |
Cow position: | chr21:40442351-40442074 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 203 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 71, 7 |
Conread position: | 1-384 |
Cow position: | chr21:23399217-23399595 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 19 |
Conread position: | 1-396 |
Cow position: | chr21:26632193-26631817 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 8 |
Conread position: | 1-398 |
Cow position: | chr21:1991545-1991925 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 135, 58 |
Conread position: | 1-398 |
Cow position: | chr21:29943168-29943552 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 259 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 31, 57 |
Conread position: | 1-400 |
Cow position: | chr21:45962658-45963049 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 69 |
Conread position: | 2-132 |
Cow position: | chr21:33974754-33974887 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 103 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 18, 64 |
Conread position: | 11-366 |
Cow position: | chr21:12756192-12756551 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 110 |
Conread position: | 11-400 |
Cow position: | chr21:45447860-45448232 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 50 |
Conread position: | 12-201 |
Cow position: | chr21:8273266-8273085 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 145 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 122, 51 |
Conread position: | 12-286 |
Cow position: | chr21:37941219-37940967 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 202 |
Alignm E-value: | 8e-35 |
Alignm gaps (pig, cow): | 148, 50 |
Conread position: | 13-400 |
Cow position: | chr21:26742229-26741876 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 192, 63 |
Conread position: | 15-240 |
Cow position: | chr21:24972331-24972115 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 171 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 119, 19 |
Conread position: | 15-400 |
Cow position: | chr21:15543679-15543306 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 53 |
Conread position: | 20-252 |
Cow position: | chr21:37341876-37341648 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 169 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 120, 49 |
Conread position: | 20-398 |
Cow position: | chr21:9976448-9976830 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 283 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 116, 61 |
Conread position: | 20-400 |
Cow position: | chr21:6667477-6667840 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 44 |
Conread position: | 64-398 |
Cow position: | chr21:28709081-28709429 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 240 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 37, 98 |
Conread position: | 68-397 |
Cow position: | chr21:39075160-39074836 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 75 |
Conread position: | 70-329 |
Cow position: | chr21:37355992-37356236 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 192 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 66, 24 |
Conread position: | 71-398 |
Cow position: | chr21:23286317-23285999 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 15 |
Conread position: | 74-401 |
Cow position: | chr21:22941698-22942025 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 167 |
Conread position: | 90-400 |
Cow position: | chr21:26579645-26579955 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 224 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 119, 19 |
Conread position: | 101-388 |
Cow position: | chr21:27521067-27520771 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 215 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 35, 120 |
Conread position: | 108-381 |
Cow position: | chr21:29644001-29643719 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 189 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 28, 114 |
Conread position: | 110-298 |
Cow position: | chr21:3614385-3614578 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 142 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 13, 51 |
Conread position: | 113-334 |
Cow position: | chr21:5994614-5994397 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 167 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 30, 134 |
Conread position: | 114-328 |
Cow position: | chr21:16679151-16679363 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 169 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 120-400 |
Cow position: | chr21:12079590-12079861 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 19 |
Conread position: | 121-400 |
Cow position: | chr21:38021269-38021541 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 203 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 15, 30 |
Conread position: | 122-398 |
Cow position: | chr21:17672007-17671737 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 210 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 14, 34 |
Conread position: | 143-398 |
Cow position: | chr21:37282918-37283160 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 198 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 62, 15 |
Conread position: | 145-400 |
Cow position: | chr21:42396379-42396631 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 191 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 59, 95 |
Conread position: | 172-402 |
Cow position: | chr21:30567541-30567320 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 180 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 37, 72 |
Conread position: | 174-400 |
Cow position: | chr21:37170181-37170412 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 182 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 70, 46 |
Conread position: | 179-371 |
Cow position: | chr21:33975069-33975266 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 146 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 30, 40 |
Conread position: | 185-400 |
Cow position: | chr21:6282363-6282569 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 170 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 17, 55 |
Conread position: | 192-399 |
Cow position: | chr21:27089519-27089305 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 159 |
Alignm E-value: | 8e-35 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 193-398 |
Cow position: | chr21:16166215-16166004 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 161 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 13, 146 |
Conread position: | 201-400 |
Cow position: | chr21:6151340-6151542 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 148 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 47, 19 |
Conread position: | 204-398 |
Cow position: | chr21:39766401-39766587 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 140 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 77, 33 |
Conread position: | 207-398 |
Cow position: | chr21:27678472-27678661 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 162 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 225-397 |
Cow position: | chr21:28650820-28650990 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 143 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 33, 18 |
Conread position: | 238-397 |
Cow position: | chr21:45286285-45286133 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 122 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 249-400 |
Cow position: | chr21:39527384-39527532 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 124 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 121, 7 |
Conread position: | 249-402 |
Cow position: | chr21:454814-454960 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 118 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 262-400 |
Cow position: | chr21:5487044-5487183 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 109 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 264-400 |
Cow position: | chr21:24972114-24971978 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 112 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 267-398 |
Cow position: | chr21:3649001-3648868 (view UCSC Genome Browser custom track) |
Alignm length: | 134 |
Alignm identity: | 101 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 275-400 |
Cow position: | chr21:1506980-1507105 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 95 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 275-400 |
Cow position: | chr21:8719125-8718997 (view UCSC Genome Browser custom track) |
Alignm length: | 130 |
Alignm identity: | 103 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 17, 90 |
Conread position: | 276-398 |
Cow position: | chr21:5588907-5588786 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 102 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 276-398 |
Cow position: | chr21:5597872-5597988 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 99 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 64, 0 |
Conread position: | 276-402 |
Cow position: | chr21:25019523-25019649 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 107 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 280-394 |
Cow position: | chr21:3614619-3614730 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 94 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 65, 0 |
Conread position: | 284-400 |
Cow position: | chr21:40441885-40441770 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 93 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.