Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-167 |
| Cow position: | chr22:45291703-45291867 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 1-262 |
| Cow position: | chr22:47385778-47385508 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 14, 218 |
| Conread position: | 1-264 |
| Cow position: | chr22:39904627-39904382 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 1-397 |
| Cow position: | chr22:4057973-4058364 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 13 |
| Conread position: | 1-400 |
| Cow position: | chr22:7281413-7281802 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 35 |
| Conread position: | 1-400 |
| Cow position: | chr22:29064524-29064910 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 1-400 |
| Cow position: | chr22:44637773-44638165 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 69 |
| Conread position: | 8-374 |
| Cow position: | chr22:15873508-15873850 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 9-400 |
| Cow position: | chr22:14730358-14729974 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 11-396 |
| Cow position: | chr22:34649427-34649799 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 11-400 |
| Cow position: | chr22:8714076-8714439 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 11-402 |
| Cow position: | chr22:45327338-45327730 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 12-400 |
| Cow position: | chr22:25458049-25458422 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 122, 64 |
| Conread position: | 20-400 |
| Cow position: | chr22:32018423-32018044 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 56 |
| Conread position: | 20-400 |
| Cow position: | chr22:42421551-42421179 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 70-220 |
| Cow position: | chr22:14508335-14508181 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 81-400 |
| Cow position: | chr22:4932149-4932472 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 85-400 |
| Cow position: | chr22:41321568-41321881 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 89-400 |
| Cow position: | chr22:12537321-12537006 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 90-379 |
| Cow position: | chr22:20444581-20444860 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 90-402 |
| Cow position: | chr22:13083310-13083594 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 95-400 |
| Cow position: | chr22:44037454-44037752 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 96-398 |
| Cow position: | chr22:34087254-34086946 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 125-390 |
| Cow position: | chr22:26787433-26787163 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 128-393 |
| Cow position: | chr22:45787902-45787648 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 141-342 |
| Cow position: | chr22:45497031-45497238 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 66, 99 |
| Conread position: | 141-343 |
| Cow position: | chr22:23681045-23681249 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 100 |
| Conread position: | 144-386 |
| Cow position: | chr22:12627951-12627713 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 149-400 |
| Cow position: | chr22:5358649-5358898 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 72 |
| Conread position: | 160-398 |
| Cow position: | chr22:25168100-25167860 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 160-400 |
| Cow position: | chr22:39424289-39424521 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 167-400 |
| Cow position: | chr22:32355695-32355472 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 168-397 |
| Cow position: | chr22:24436009-24435780 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 173-400 |
| Cow position: | chr22:22010641-22010418 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 173-402 |
| Cow position: | chr22:18324594-18324367 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 182-400 |
| Cow position: | chr22:44687302-44687527 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 186-400 |
| Cow position: | chr22:29004935-29004720 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 194-401 |
| Cow position: | chr22:6246877-6247079 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 196-400 |
| Cow position: | chr22:40860762-40860974 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 125 |
| Conread position: | 201-400 |
| Cow position: | chr22:11749174-11748995 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 208-398 |
| Cow position: | chr22:1532961-1533148 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 224-400 |
| Cow position: | chr22:24257356-24257182 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 224-402 |
| Cow position: | chr22:40046484-40046652 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 245-400 |
| Cow position: | chr22:45788064-45787909 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 264-385 |
| Cow position: | chr22:5714876-5714755 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.