Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-208 |
| Cow position: | chr23:5265311-5265115 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-261 |
| Cow position: | chr23:6964142-6963902 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-400 |
| Cow position: | chr23:16170912-16171309 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 1-400 |
| Cow position: | chr23:25409026-25409404 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 11 |
| Conread position: | 1-400 |
| Cow position: | chr23:36674567-36674189 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 9-402 |
| Cow position: | chr23:2784175-2783787 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 11-270 |
| Cow position: | chr23:38026469-38026222 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 11-402 |
| Cow position: | chr23:14642302-14641899 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 11-402 |
| Cow position: | chr23:24400982-24400590 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 13-401 |
| Cow position: | chr23:9546595-9546971 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 15-400 |
| Cow position: | chr23:23917085-23917465 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 15-402 |
| Cow position: | chr23:39070005-39069627 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 53 |
| Conread position: | 25-349 |
| Cow position: | chr23:30302185-30301864 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 180, 44 |
| Conread position: | 71-400 |
| Cow position: | chr23:16479646-16479313 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 103 |
| Conread position: | 73-383 |
| Cow position: | chr23:23285367-23285660 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 66 |
| Conread position: | 73-400 |
| Cow position: | chr23:22605697-22605387 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 139, 69 |
| Conread position: | 90-400 |
| Cow position: | chr23:5258624-5258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 42 |
| Conread position: | 94-398 |
| Cow position: | chr23:15147718-15147421 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 165 |
| Conread position: | 104-389 |
| Cow position: | chr23:9654535-9654258 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 121-255 |
| Cow position: | chr23:206173-206308 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 117 |
| Conread position: | 121-402 |
| Cow position: | chr23:39822776-39823054 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 132-394 |
| Cow position: | chr23:14572732-14572977 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 138-400 |
| Cow position: | chr23:35654724-35654465 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 131, 11 |
| Conread position: | 143-400 |
| Cow position: | chr23:36484088-36483844 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 146-402 |
| Cow position: | chr23:30691686-30691437 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 149-398 |
| Cow position: | chr23:34514547-34514303 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 166-398 |
| Cow position: | chr23:7571314-7571082 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 169-364 |
| Cow position: | chr23:7253587-7253767 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 172-400 |
| Cow position: | chr23:1682435-1682657 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 173-325 |
| Cow position: | chr23:32869424-32869274 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 173-402 |
| Cow position: | chr23:32845653-32845430 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 175-400 |
| Cow position: | chr23:2330408-2330194 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 45 |
| Conread position: | 177-344 |
| Cow position: | chr23:15694244-15694074 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 160 |
| Conread position: | 183-400 |
| Cow position: | chr23:20023841-20024056 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 186-400 |
| Cow position: | chr23:9425831-9425619 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 192-402 |
| Cow position: | chr23:37036470-37036273 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 193-398 |
| Cow position: | chr23:14752006-14751818 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 201-398 |
| Cow position: | chr23:30127350-30127163 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 219-398 |
| Cow position: | chr23:25078797-25078621 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 231-396 |
| Cow position: | chr23:9724027-9723866 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 244-393 |
| Cow position: | chr23:6963742-6963596 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 12, 84 |
| Conread position: | 244-400 |
| Cow position: | chr23:5265113-5264963 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 257-390 |
| Cow position: | chr23:13518641-13518507 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 277-400 |
| Cow position: | chr23:27900530-27900654 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 283-400 |
| Cow position: | chr23:13788205-13788088 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.