Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-203 |
| Cow position: | chr24:25343235-25343430 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 1-349 |
| Cow position: | chr24:36853500-36853863 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 254 |
| Conread position: | 1-357 |
| Cow position: | chr24:38643798-38644143 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 28 |
| Conread position: | 1-399 |
| Cow position: | chr24:6177576-6177964 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 14 |
| Conread position: | 1-399 |
| Cow position: | chr24:32579357-32579737 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 62 |
| Conread position: | 1-400 |
| Cow position: | chr24:6423886-6423510 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 1-400 |
| Cow position: | chr24:42817438-42817828 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chr24:43350919-43350527 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 68 |
| Conread position: | 1-401 |
| Cow position: | chr24:35835844-35835471 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 1-402 |
| Cow position: | chr24:17417256-17417653 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 177 |
| Conread position: | 9-360 |
| Cow position: | chr24:31845631-31845294 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 10-384 |
| Cow position: | chr24:22839423-22839048 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 11-368 |
| Cow position: | chr24:9867285-9866937 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 65 |
| Conread position: | 11-394 |
| Cow position: | chr24:17763078-17762710 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 55 |
| Conread position: | 12-383 |
| Cow position: | chr24:25246228-25246580 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 270, 27 |
| Conread position: | 12-399 |
| Cow position: | chr24:41405136-41404770 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 15-266 |
| Cow position: | chr24:15474880-15475122 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 15-400 |
| Cow position: | chr24:14913385-14913014 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 67-351 |
| Cow position: | chr24:21714969-21714683 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 157 |
| Conread position: | 68-334 |
| Cow position: | chr24:25966852-25967114 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 72-400 |
| Cow position: | chr24:36097703-36098034 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 84-400 |
| Cow position: | chr24:31301421-31301114 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 96-400 |
| Cow position: | chr24:33274122-33274417 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 101-400 |
| Cow position: | chr24:30899559-30899258 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 114-400 |
| Cow position: | chr24:19627696-19627996 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 114-402 |
| Cow position: | chr24:16552725-16552439 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 126-364 |
| Cow position: | chr24:36098888-36098648 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 149-400 |
| Cow position: | chr24:43491392-43491143 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 102 |
| Conread position: | 151-400 |
| Cow position: | chr24:1295946-1295699 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 154-342 |
| Cow position: | chr24:620882-621066 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 160-396 |
| Cow position: | chr24:37386041-37385809 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 174-402 |
| Cow position: | chr24:23253637-23253410 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 185-400 |
| Cow position: | chr24:28599019-28598809 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 186-398 |
| Cow position: | chr24:44484041-44483838 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 186-400 |
| Cow position: | chr24:25934909-25935133 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 188-397 |
| Cow position: | chr24:36550716-36550507 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 201-399 |
| Cow position: | chr24:3088987-3089191 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 163 |
| Conread position: | 221-399 |
| Cow position: | chr24:42338771-42338947 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 244-400 |
| Cow position: | chr24:39384540-39384383 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 265-400 |
| Cow position: | chr24:26906334-26906470 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 268-400 |
| Cow position: | chr24:23012942-23013073 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 277-402 |
| Cow position: | chr24:16590523-16590651 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 298-400 |
| Cow position: | chr24:15476623-15476724 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
Show alignments to all cow chromosomes.