Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-345 |
| Cow position: | chr25:16193335-16193003 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 63 |
| Conread position: | 1-368 |
| Cow position: | chr25:38358277-38358634 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 187 |
| Conread position: | 1-387 |
| Cow position: | chr25:18206103-18205745 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 23 |
| Conread position: | 1-400 |
| Cow position: | chr25:13123409-13123799 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 1-402 |
| Cow position: | chr25:23014355-23014734 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 66 |
| Conread position: | 3-318 |
| Cow position: | chr25:33924901-33925203 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 126, 62 |
| Conread position: | 3-400 |
| Cow position: | chr25:19686553-19686166 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 6-370 |
| Cow position: | chr25:5567558-5567186 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 8-398 |
| Cow position: | chr25:16940657-16940272 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 51 |
| Conread position: | 9-402 |
| Cow position: | chr25:33025204-33024818 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 127, 13 |
| Conread position: | 11-400 |
| Cow position: | chr25:13704217-13704597 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 15-343 |
| Cow position: | chr25:36235609-36235297 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 19 |
| Conread position: | 61-241 |
| Cow position: | chr25:18262506-18262321 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 69-400 |
| Cow position: | chr25:11526762-11526452 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 114 |
| Conread position: | 70-393 |
| Cow position: | chr25:17472917-17473237 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 173 |
| Conread position: | 77-398 |
| Cow position: | chr25:20457525-20457229 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 77-400 |
| Cow position: | chr25:16240353-16240037 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 77-401 |
| Cow position: | chr25:8618154-8617837 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 28, 98 |
| Conread position: | 90-334 |
| Cow position: | chr25:23559619-23559373 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 47, 109 |
| Conread position: | 90-384 |
| Cow position: | chr25:13486621-13486895 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 95-400 |
| Cow position: | chr25:20180752-20181051 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 95-400 |
| Cow position: | chr25:33345931-33346212 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 111, 37 |
| Conread position: | 97-400 |
| Cow position: | chr25:5377358-5377064 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 126 |
| Conread position: | 101-337 |
| Cow position: | chr25:30036036-30036273 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 101-400 |
| Cow position: | chr25:14279732-14280018 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 139-400 |
| Cow position: | chr25:10010226-10009977 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 142-400 |
| Cow position: | chr25:34159609-34159357 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 126, 43 |
| Conread position: | 142-400 |
| Cow position: | chr25:40833105-40832849 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 143-398 |
| Cow position: | chr25:13224622-13224864 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 156-327 |
| Cow position: | chr25:16429425-16429252 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 158-338 |
| Cow position: | chr25:35038087-35037912 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 158-401 |
| Cow position: | chr25:20497140-20497370 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 176-400 |
| Cow position: | chr25:16687749-16687527 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 177-398 |
| Cow position: | chr25:13216140-13216354 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 178-400 |
| Cow position: | chr25:8447823-8448034 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 189-398 |
| Cow position: | chr25:33002131-33002333 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 193-400 |
| Cow position: | chr25:15564568-15564766 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 195-400 |
| Cow position: | chr25:9785670-9785462 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 69 |
| Conread position: | 201-400 |
| Cow position: | chr25:20624191-20624387 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 207-383 |
| Cow position: | chr25:28008006-28007831 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 118 |
| Conread position: | 209-392 |
| Cow position: | chr25:16482266-16482440 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 217-402 |
| Cow position: | chr25:20423275-20423458 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 265-400 |
| Cow position: | chr25:5534011-5533879 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 267-397 |
| Cow position: | chr25:27863145-27863278 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 270-400 |
| Cow position: | chr25:31515675-31515809 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 272-401 |
| Cow position: | chr25:40828798-40828666 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 280-398 |
| Cow position: | chr25:3685712-3685594 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 291-393 |
| Cow position: | chr25:25714159-25714261 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.