Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-398 |
| Cow position: | chr27:3934929-3935338 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 3-350 |
| Cow position: | chr27:11935459-11935110 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 3-402 |
| Cow position: | chr27:17564788-17564399 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 33 |
| Conread position: | 7-401 |
| Cow position: | chr27:2246746-2246371 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 22 |
| Conread position: | 8-398 |
| Cow position: | chr27:31238218-31238612 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 194 |
| Conread position: | 9-260 |
| Cow position: | chr27:20866452-20866715 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 9-312 |
| Cow position: | chr27:11755727-11756010 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 127, 58 |
| Conread position: | 9-361 |
| Cow position: | chr27:23926100-23926433 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 9-400 |
| Cow position: | chr27:4962393-4962758 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 12-397 |
| Cow position: | chr27:9261562-9261188 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 15-400 |
| Cow position: | chr27:23074039-23073653 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 15-402 |
| Cow position: | chr27:30889147-30889521 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 23-400 |
| Cow position: | chr27:13860856-13861201 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 61-402 |
| Cow position: | chr27:18693998-18694321 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 68-400 |
| Cow position: | chr27:18589441-18589117 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 72-316 |
| Cow position: | chr27:6534362-6534604 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 77-391 |
| Cow position: | chr27:26091718-26092032 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 78-400 |
| Cow position: | chr27:18057196-18056872 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 171 |
| Conread position: | 89-400 |
| Cow position: | chr27:11021436-11021138 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 90-399 |
| Cow position: | chr27:10113708-10114004 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 91-397 |
| Cow position: | chr27:4449648-4449938 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 105-396 |
| Cow position: | chr27:1540616-1540881 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 105-397 |
| Cow position: | chr27:4508455-4508158 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 57 |
| Conread position: | 113-286 |
| Cow position: | chr27:280959-281139 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 119 |
| Conread position: | 121-388 |
| Cow position: | chr27:15211411-15211136 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 133-332 |
| Cow position: | chr27:11232814-11232640 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 147-400 |
| Cow position: | chr27:7860143-7860395 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 168-398 |
| Cow position: | chr27:31376199-31375976 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 169-381 |
| Cow position: | chr27:12547767-12547979 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 169-392 |
| Cow position: | chr27:28292970-28292754 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 172-402 |
| Cow position: | chr27:18179079-18179308 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 173-399 |
| Cow position: | chr27:5531302-5531514 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 182-400 |
| Cow position: | chr27:4921870-4922086 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 186-400 |
| Cow position: | chr27:18573477-18573264 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 189-400 |
| Cow position: | chr27:18546495-18546297 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 200-399 |
| Cow position: | chr27:31524101-31523909 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 200-400 |
| Cow position: | chr27:12000101-12000298 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 215-334 |
| Cow position: | chr27:30643945-30643827 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 239-327 |
| Cow position: | chr27:18958984-18959071 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 249-400 |
| Cow position: | chr27:23966307-23966156 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 8 |
| Conread position: | 262-400 |
| Cow position: | chr27:14881376-14881516 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 267-400 |
| Cow position: | chr27:5539338-5539470 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 267-400 |
| Cow position: | chr27:7183806-7183940 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 268-397 |
| Cow position: | chr27:16509605-16509734 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 274-400 |
| Cow position: | chr27:281263-281389 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-400 |
| Cow position: | chr27:23466648-23466528 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 297-400 |
| Cow position: | chr27:18780190-18780087 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.