Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-217 |
| Cow position: | chr29:30813641-30813850 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 133, 60 |
| Conread position: | 1-326 |
| Cow position: | chr29:42269126-42269450 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 69, 205 |
| Conread position: | 1-340 |
| Cow position: | chr29:22454628-22454303 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 1-400 |
| Cow position: | chr29:3346168-3346544 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 60 |
| Conread position: | 1-400 |
| Cow position: | chr29:8906729-8907109 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 1-401 |
| Cow position: | chr29:16359824-16360206 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 2-276 |
| Cow position: | chr29:37207963-37208233 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 78, 57 |
| Conread position: | 2-353 |
| Cow position: | chr29:4458792-4459135 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 68 |
| Conread position: | 5-401 |
| Cow position: | chr29:21198446-21198040 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 84 |
| Conread position: | 8-399 |
| Cow position: | chr29:8891053-8890676 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 8-400 |
| Cow position: | chr29:18338328-18337964 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 9-400 |
| Cow position: | chr29:3822746-3823131 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 11-378 |
| Cow position: | chr29:19931548-19931896 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 59 |
| Conread position: | 12-400 |
| Cow position: | chr29:7738483-7738108 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 12-400 |
| Cow position: | chr29:23988701-23989083 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 12-400 |
| Cow position: | chr29:35036946-35037316 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 25-246 |
| Cow position: | chr29:17712230-17712457 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 144 |
| Conread position: | 28-241 |
| Cow position: | chr29:7959596-7959386 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 107, 42 |
| Conread position: | 50-400 |
| Cow position: | chr29:30921162-30920793 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 63-402 |
| Cow position: | chr29:2481093-2480763 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 74 |
| Conread position: | 68-321 |
| Cow position: | chr29:2848162-2847910 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 109, 58 |
| Conread position: | 68-400 |
| Cow position: | chr29:34330982-34330641 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 105-397 |
| Cow position: | chr29:794888-795181 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 123-400 |
| Cow position: | chr29:44028107-44028378 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 138-400 |
| Cow position: | chr29:7892636-7892374 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 142-400 |
| Cow position: | chr29:22655603-22655356 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 153-400 |
| Cow position: | chr29:12193508-12193746 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 154-400 |
| Cow position: | chr29:682188-681956 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 155-322 |
| Cow position: | chr29:5174331-5174498 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 158-400 |
| Cow position: | chr29:28115500-28115742 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 169-400 |
| Cow position: | chr29:34392158-34392392 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 172-384 |
| Cow position: | chr29:8685357-8685565 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 184-399 |
| Cow position: | chr29:1711416-1711624 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 193-383 |
| Cow position: | chr29:19188449-19188642 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 194-377 |
| Cow position: | chr29:43962903-43962731 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 198-400 |
| Cow position: | chr29:30814071-30814266 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 201-332 |
| Cow position: | chr29:24442930-24442801 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 201-402 |
| Cow position: | chr29:4670863-4670672 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 204-400 |
| Cow position: | chr29:19252663-19252853 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 207-400 |
| Cow position: | chr29:30581199-30581391 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 209-400 |
| Cow position: | chr29:849475-849668 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 165 |
| Conread position: | 230-401 |
| Cow position: | chr29:16164627-16164462 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 248-400 |
| Cow position: | chr29:18361258-18361105 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 249-400 |
| Cow position: | chr29:40091684-40091535 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 255-400 |
| Cow position: | chr29:38386855-38386999 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 266-402 |
| Cow position: | chr29:13653910-13654043 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 268-398 |
| Cow position: | chr29:38333931-38334063 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 277-400 |
| Cow position: | chr29:29138052-29137925 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 292-398 |
| Cow position: | chr29:3697103-3697209 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 295-402 |
| Cow position: | chr29:42269674-42269781 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 311-400 |
| Cow position: | chr29:5175024-5175112 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.