Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-241
Cow position: chr4:59565727-59565971 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 73

Conread position: 1-312
Cow position: chr4:14564725-14564435 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 94

Conread position: 1-398
Cow position: chr4:39646865-39647229 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 281
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 135, 28

Conread position: 1-400
Cow position: chr4:5188822-5188433 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 66

Conread position: 1-400
Cow position: chr4:57222033-57221641 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 20

Conread position: 1-401
Cow position: chr4:29067453-29067077 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 61

Conread position: 2-185
Cow position: chr4:27444026-27444207 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 61

Conread position: 2-384
Cow position: chr4:47511217-47511589 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 18

Conread position: 2-402
Cow position: chr4:53641516-53641889 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 18

Conread position: 4-271
Cow position: chr4:6793564-6793811 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 77, 54

Conread position: 4-399
Cow position: chr4:58432774-58432391 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 66

Conread position: 5-368
Cow position: chr4:21162832-21163193 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 58

Conread position: 5-400
Cow position: chr4:34043432-34043026 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 65

Conread position: 9-361
Cow position: chr4:68107164-68106827 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 246
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 126, 16

Conread position: 10-311
Cow position: chr4:2238035-2237750 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 122, 58

Conread position: 11-395
Cow position: chr4:18803191-18802830 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 54

Conread position: 11-400
Cow position: chr4:9822347-9822722 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 39

Conread position: 11-402
Cow position: chr4:49741766-49742136 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 65

Conread position: 11-402
Cow position: chr4:60640002-60639637 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 125, 38

Conread position: 11-402
Cow position: chr4:60662607-60662972 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 125, 38

Conread position: 12-198
Cow position: chr4:4300729-4300916 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 84, 58

Conread position: 12-354
Cow position: chr4:46875312-46874971 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 122, 17

Conread position: 12-401
Cow position: chr4:58856314-58855941 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 273
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 11, 55

Conread position: 15-319
Cow position: chr4:10722608-10722901 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 8, 56

Conread position: 17-402
Cow position: chr4:41975510-41975145 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 40

Conread position: 37-399
Cow position: chr4:27505347-27505688 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 99, 33

Conread position: 39-259
Cow position: chr4:4135331-4135547 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 95, 31

Conread position: 45-400
Cow position: chr4:5783956-5784289 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 48-254
Cow position: chr4:35181329-35181538 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 24

Conread position: 50-400
Cow position: chr4:36759503-36759861 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 26

Conread position: 56-394
Cow position: chr4:9106272-9106609 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 64

Conread position: 60-397
Cow position: chr4:46151536-46151208 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 176

Conread position: 69-388
Cow position: chr4:7655013-7655337 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 72, 12

Conread position: 69-400
Cow position: chr4:20311916-20312243 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 215
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 141

Conread position: 73-400
Cow position: chr4:15046115-15046458 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 8, 211

Conread position: 75-366
Cow position: chr4:20925753-20925468 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 59

Conread position: 78-277
Cow position: chr4:56218594-56218792 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 167

Conread position: 78-392
Cow position: chr4:22507126-22506817 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 170

Conread position: 81-400
Cow position: chr4:57652469-57652792 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 83-400
Cow position: chr4:34572270-34571954 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 53, 30

Conread position: 85-302
Cow position: chr4:27228725-27228951 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 91-377
Cow position: chr4:15283453-15283732 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 92

Conread position: 91-400
Cow position: chr4:57565953-57565647 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 161

Conread position: 92-310
Cow position: chr4:24713389-24713166 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 44, 156

Conread position: 92-402
Cow position: chr4:2443624-2443319 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 92-402
Cow position: chr4:58873525-58873819 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 40, 0

Conread position: 102-249
Cow position: chr4:15120219-15120368 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 106-398
Cow position: chr4:31003075-31002782 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 140

Conread position: 106-400
Cow position: chr4:47087129-47086824 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 16, 143

Conread position: 114-367
Cow position: chr4:36662062-36661830 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 74

Conread position: 122-398
Cow position: chr4:49881711-49881420 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 158

Conread position: 122-400
Cow position: chr4:25924661-25924386 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 121

Conread position: 124-396
Cow position: chr4:32140968-32140704 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 124-400
Cow position: chr4:6630019-6629755 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 79, 18

Conread position: 136-400
Cow position: chr4:31586285-31586030 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 142-324
Cow position: chr4:51905590-51905773 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 63, 104

Conread position: 142-400
Cow position: chr4:5978514-5978264 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 86

Conread position: 142-400
Cow position: chr4:45400977-45401223 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 66, 16

Conread position: 145-357
Cow position: chr4:62407483-62407691 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 88

Conread position: 146-402
Cow position: chr4:5886663-5886912 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 103

Conread position: 147-358
Cow position: chr4:54347527-54347738 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 76

Conread position: 151-318
Cow position: chr4:1059352-1059188 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 85

Conread position: 152-364
Cow position: chr4:9089751-9089539 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 51, 96

Conread position: 155-400
Cow position: chr4:4519485-4519724 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 188
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 97, 50

Conread position: 158-400
Cow position: chr4:52597215-52596973 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 11

Conread position: 160-400
Cow position: chr4:9128076-9128323 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 42, 77

Conread position: 164-369
Cow position: chr4:4192542-4192741 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 25

Conread position: 169-328
Cow position: chr4:63875736-63875585 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 76

Conread position: 179-383
Cow position: chr4:27444403-27444611 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 150

Conread position: 181-400
Cow position: chr4:52697232-52697445 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 8, 44

Conread position: 186-402
Cow position: chr4:59809587-59809380 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 19, 118

Conread position: 187-400
Cow position: chr4:58830499-58830302 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 59

Conread position: 201-386
Cow position: chr4:4029209-4029392 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 201-402
Cow position: chr4:36856988-36857187 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 88

Conread position: 203-400
Cow position: chr4:4132903-4133088 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 44

Conread position: 206-400
Cow position: chr4:67321483-67321665 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 239-402
Cow position: chr4:22891687-22891523 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 251-400
Cow position: chr4:23536414-23536562 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 266-398
Cow position: chr4:6793927-6794058 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 114
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 89, 0

Conread position: 269-398
Cow position: chr4:59566757-59566887 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 270-400
Cow position: chr4:61593718-61593589 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 275-400
Cow position: chr4:23089496-23089370 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 102

Conread position: 281-392
Cow position: chr4:17177982-17178093 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 96
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.