Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-373
Cow position: chr6:39917397-39917762 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 13

Conread position: 1-396
Cow position: chr6:62754251-62753876 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 13

Conread position: 1-398
Cow position: chr6:45617192-45616816 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 36

Conread position: 1-400
Cow position: chr6:6635382-6635764 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 18

Conread position: 1-400
Cow position: chr6:66676950-66677356 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 291
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 105, 23

Conread position: 2-261
Cow position: chr6:69274540-69274287 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 140, 18

Conread position: 5-402
Cow position: chr6:55659758-55659366 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 274
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 59, 68

Conread position: 8-398
Cow position: chr6:11159751-11159373 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 19

Conread position: 9-235
Cow position: chr6:47847762-47847530 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 11

Conread position: 9-397
Cow position: chr6:5275747-5275357 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 128, 50

Conread position: 9-400
Cow position: chr6:1077172-1076798 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 26

Conread position: 11-331
Cow position: chr6:3374188-3373862 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 56

Conread position: 11-358
Cow position: chr6:5500847-5500481 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 254
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 26

Conread position: 11-364
Cow position: chr6:41157474-41157808 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 124, 55

Conread position: 11-393
Cow position: chr6:66840109-66840484 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 264
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 123, 59

Conread position: 11-398
Cow position: chr6:32428688-32429051 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 59

Conread position: 11-400
Cow position: chr6:41557723-41558106 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 65

Conread position: 11-400
Cow position: chr6:53416712-53416332 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 51

Conread position: 13-393
Cow position: chr6:6722392-6722762 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 53

Conread position: 13-400
Cow position: chr6:3017706-3018091 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 25

Conread position: 13-402
Cow position: chr6:29077986-29078353 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 54

Conread position: 15-312
Cow position: chr6:55743308-55743593 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 190, 124

Conread position: 16-400
Cow position: chr6:23891810-23892176 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 49

Conread position: 38-400
Cow position: chr6:28087242-28086886 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 31

Conread position: 60-392
Cow position: chr6:68318732-68318414 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 87, 30

Conread position: 68-398
Cow position: chr6:5678756-5678417 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 166

Conread position: 69-400
Cow position: chr6:45692367-45692045 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 137

Conread position: 70-330
Cow position: chr6:812114-811847 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 70-394
Cow position: chr6:26692836-26692510 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 16, 202

Conread position: 71-374
Cow position: chr6:44377562-44377869 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 102

Conread position: 71-400
Cow position: chr6:35698124-35697794 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 76-367
Cow position: chr6:55662031-55662325 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 60, 97

Conread position: 79-381
Cow position: chr6:23932675-23932394 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 133

Conread position: 79-400
Cow position: chr6:31687887-31687569 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 164

Conread position: 80-350
Cow position: chr6:65227973-65227701 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 54, 98

Conread position: 85-400
Cow position: chr6:58593828-58593522 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 99

Conread position: 86-400
Cow position: chr6:20332621-20332931 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 75

Conread position: 90-400
Cow position: chr6:54930403-54930096 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 211
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 46, 118

Conread position: 96-331
Cow position: chr6:22098343-22098115 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 61

Conread position: 96-370
Cow position: chr6:35831866-35832146 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 40, 23

Conread position: 96-402
Cow position: chr6:44389928-44389623 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 151

Conread position: 102-366
Cow position: chr6:54470188-54470453 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 145

Conread position: 114-400
Cow position: chr6:14279994-14280283 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 48

Conread position: 121-339
Cow position: chr6:33311453-33311668 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 109

Conread position: 133-364
Cow position: chr6:39293532-39293755 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 10, 88

Conread position: 134-398
Cow position: chr6:54295986-54296232 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 9, 76

Conread position: 134-402
Cow position: chr6:35126748-35126488 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 110

Conread position: 141-395
Cow position: chr6:34556877-34557128 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 144-384
Cow position: chr6:37085265-37085500 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 23

Conread position: 146-396
Cow position: chr6:62327915-62328158 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 57, 26

Conread position: 147-400
Cow position: chr6:14162235-14161995 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 22

Conread position: 148-402
Cow position: chr6:40241060-40241306 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 93

Conread position: 149-397
Cow position: chr6:43596172-43595924 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 56, 97

Conread position: 153-400
Cow position: chr6:4666120-4665884 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 163-394
Cow position: chr6:55398193-55398414 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 164-400
Cow position: chr6:27711019-27711255 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 188

Conread position: 165-398
Cow position: chr6:19715851-19715623 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 94, 21

Conread position: 172-402
Cow position: chr6:50501994-50502216 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 74

Conread position: 192-384
Cow position: chr6:12520403-12520593 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 50, 18

Conread position: 192-397
Cow position: chr6:20748803-20749006 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 13, 74

Conread position: 201-400
Cow position: chr6:1940068-1939865 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 41, 146

Conread position: 202-400
Cow position: chr6:15261016-15261211 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 53

Conread position: 202-400
Cow position: chr6:15262061-15262256 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 9, 53

Conread position: 202-400
Cow position: chr6:24496498-24496305 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 7, 0

Conread position: 202-400
Cow position: chr6:44771264-44771445 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 207-400
Cow position: chr6:3741916-3742092 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 212-400
Cow position: chr6:69274115-69273919 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 46, 179

Conread position: 229-399
Cow position: chr6:24260354-24260186 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 28, 0

Conread position: 245-402
Cow position: chr6:3936154-3936000 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 131
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 249-400
Cow position: chr6:49649667-49649816 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 15

Conread position: 254-400
Cow position: chr6:18562112-18561973 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 257-400
Cow position: chr6:6244261-6244121 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 124
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 76

Conread position: 259-400
Cow position: chr6:35266006-35265872 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 259-400
Cow position: chr6:41463246-41463116 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 259-402
Cow position: chr6:16495129-16494986 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 117, 72

Conread position: 263-401
Cow position: chr6:28008968-28008830 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 264-397
Cow position: chr6:23648436-23648305 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 264-400
Cow position: chr6:13092587-13092451 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 264-400
Cow position: chr6:29300030-29300165 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 105

Conread position: 264-400
Cow position: chr6:47547540-47547671 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 267-400
Cow position: chr6:5516857-5516722 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 267-400
Cow position: chr6:62789497-62789631 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 268-400
Cow position: chr6:35406858-35406724 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 269-397
Cow position: chr6:62082791-62082912 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 269-401
Cow position: chr6:51071833-51071967 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 272-398
Cow position: chr6:40157001-40156873 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 272-400
Cow position: chr6:24337576-24337448 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 109
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 274-400
Cow position: chr6:30287043-30287169 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 276-400
Cow position: chr6:27457725-27457851 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 287-402
Cow position: chr6:64541734-64541848 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 297-396
Cow position: chr6:40295644-40295545 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.