Cow genome map

Conread name: rcte04_l7.y1

Conread position: 1-313
Cow position: chr7:65953161-65952857 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 133, 19

Conread position: 1-344
Cow position: chr7:13823024-13823356 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 59

Conread position: 1-370
Cow position: chr7:5701159-5701520 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 19

Conread position: 1-392
Cow position: chr7:45064181-45063801 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 69

Conread position: 1-397
Cow position: chr7:62516249-62516629 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 39

Conread position: 1-399
Cow position: chr7:29377910-29377530 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 75

Conread position: 1-400
Cow position: chr7:61425793-61426199 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 7

Conread position: 1-402
Cow position: chr7:20104778-20104380 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 56

Conread position: 2-371
Cow position: chr7:42222184-42221826 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 67

Conread position: 3-363
Cow position: chr7:39512360-39512025 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 64

Conread position: 3-400
Cow position: chr7:67498939-67499318 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 279
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 164, 58

Conread position: 9-342
Cow position: chr7:64198633-64198315 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 39

Conread position: 9-400
Cow position: chr7:45721972-45722342 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 27

Conread position: 10-398
Cow position: chr7:5247692-5247315 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 268
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 126, 51

Conread position: 10-402
Cow position: chr7:20289005-20288635 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 280
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 17, 51

Conread position: 11-344
Cow position: chr7:63328335-63328662 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 106, 214

Conread position: 11-397
Cow position: chr7:62048662-62049033 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 43

Conread position: 11-398
Cow position: chr7:45099475-45099855 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 55

Conread position: 11-401
Cow position: chr7:52532880-52532495 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 10, 61

Conread position: 12-400
Cow position: chr7:52131369-52131753 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 22, 57

Conread position: 13-399
Cow position: chr7:59844705-59845077 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 59

Conread position: 14-258
Cow position: chr7:59164149-59164388 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 120, 46

Conread position: 15-400
Cow position: chr7:11592962-11592607 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 11

Conread position: 16-242
Cow position: chr7:5448052-5447829 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 53

Conread position: 16-255
Cow position: chr7:5435634-5435399 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 118, 53

Conread position: 17-400
Cow position: chr7:68246563-68246930 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 43

Conread position: 69-400
Cow position: chr7:48335190-48334878 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 75

Conread position: 72-400
Cow position: chr7:43004670-43005010 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 29

Conread position: 77-318
Cow position: chr7:43231053-43231288 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 93

Conread position: 78-400
Cow position: chr7:12920337-12920024 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 95, 32

Conread position: 89-291
Cow position: chr7:31442037-31441831 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 203

Conread position: 89-400
Cow position: chr7:46216364-46216673 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 56

Conread position: 90-241
Cow position: chr7:1666791-1666947 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 90-244
Cow position: chr7:26479183-26479028 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 96

Conread position: 90-398
Cow position: chr7:56664380-56664675 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 134

Conread position: 95-398
Cow position: chr7:42555346-42555631 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 213
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 109, 37

Conread position: 104-401
Cow position: chr7:15859646-15859351 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 34

Conread position: 115-400
Cow position: chr7:185239-185508 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 12, 59

Conread position: 122-400
Cow position: chr7:59204617-59204909 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 125-400
Cow position: chr7:56356720-56356449 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 68, 33

Conread position: 133-399
Cow position: chr7:65519778-65519489 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 31, 12

Conread position: 133-400
Cow position: chr7:68366891-68366616 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 133

Conread position: 141-400
Cow position: chr7:40622551-40622801 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 198
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 63, 97

Conread position: 142-399
Cow position: chr7:40023078-40023308 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 142-400
Cow position: chr7:24883642-24883389 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 24, 108

Conread position: 146-364
Cow position: chr7:30027509-30027731 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 14, 134

Conread position: 146-400
Cow position: chr7:16738809-16739050 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 95

Conread position: 173-390
Cow position: chr7:14435425-14435213 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 45

Conread position: 182-402
Cow position: chr7:63547368-63547167 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 58, 0

Conread position: 183-402
Cow position: chr7:54060433-54060204 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 0

Conread position: 184-400
Cow position: chr7:32589217-32589437 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 161

Conread position: 185-402
Cow position: chr7:28010275-28010063 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 122, 26

Conread position: 192-400
Cow position: chr7:43257617-43257818 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 15

Conread position: 204-371
Cow position: chr7:64367125-64367293 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 33

Conread position: 223-400
Cow position: chr7:23612544-23612362 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 17, 141

Conread position: 238-400
Cow position: chr7:8893584-8893421 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 138
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 0

Conread position: 239-400
Cow position: chr7:40643459-40643622 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 244-383
Cow position: chr7:40615971-40616099 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 248-398
Cow position: chr7:52573304-52573156 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 248-400
Cow position: chr7:59164785-59164931 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 60

Conread position: 249-399
Cow position: chr7:48413600-48413448 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 259-400
Cow position: chr7:27765742-27765875 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 262-386
Cow position: chr7:33339609-33339730 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 264-397
Cow position: chr7:53356219-53356089 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 268-393
Cow position: chr7:7763229-7763353 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 272-400
Cow position: chr7:58872323-58872193 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 20, 78

Conread position: 273-400
Cow position: chr7:31441620-31441497 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 277-401
Cow position: chr7:49666522-49666646 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 279-402
Cow position: chr7:50034603-50034483 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 281-401
Cow position: chr7:22647780-22647658 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 282-398
Cow position: chr7:11188807-11188921 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 289-402
Cow position: chr7:38526562-38526672 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 303-400
Cow position: chr7:37259659-37259561 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.