Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-331 |
| Cow position: | chr8:54828444-54828765 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 75 |
| Conread position: | 1-373 |
| Cow position: | chr8:4336861-4336493 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 1-384 |
| Cow position: | chr8:48682292-48681912 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 1-387 |
| Cow position: | chr8:30021716-30021346 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-398 |
| Cow position: | chr8:18725416-18725799 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 1-398 |
| Cow position: | chr8:33437999-33438388 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 1-398 |
| Cow position: | chr8:40432658-40432276 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 1-400 |
| Cow position: | chr8:2974859-2975262 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 58 |
| Conread position: | 1-400 |
| Cow position: | chr8:7104207-7103821 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 1-400 |
| Cow position: | chr8:20341504-20341095 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 82, 19 |
| Conread position: | 1-400 |
| Cow position: | chr8:22103002-22102595 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 1-400 |
| Cow position: | chr8:54158944-54159334 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 33 |
| Conread position: | 5-246 |
| Cow position: | chr8:18984684-18984453 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 8-244 |
| Cow position: | chr8:46714476-46714241 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 198, 76 |
| Conread position: | 9-267 |
| Cow position: | chr8:20672228-20671981 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 9-331 |
| Cow position: | chr8:36686882-36687217 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 9-394 |
| Cow position: | chr8:57404242-57404644 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 10-367 |
| Cow position: | chr8:19369271-19368954 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 10-398 |
| Cow position: | chr8:21945639-21946005 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 124, 60 |
| Conread position: | 11-238 |
| Cow position: | chr8:51633991-51633763 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 11-315 |
| Cow position: | chr8:18810640-18810941 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 11-363 |
| Cow position: | chr8:53891740-53892088 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 49 |
| Conread position: | 11-370 |
| Cow position: | chr8:23440890-23440547 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 13-326 |
| Cow position: | chr8:12790665-12790373 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 186, 22 |
| Conread position: | 15-196 |
| Cow position: | chr8:21078750-21078927 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 46 |
| Conread position: | 15-351 |
| Cow position: | chr8:42151774-42151462 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 15-398 |
| Cow position: | chr8:47128786-47129160 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 20-385 |
| Cow position: | chr8:5874373-5874727 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 42 |
| Conread position: | 20-396 |
| Cow position: | chr8:15870884-15870517 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 20-398 |
| Cow position: | chr8:40273421-40273053 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 23-255 |
| Cow position: | chr8:20286812-20287041 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 25-400 |
| Cow position: | chr8:32327133-32327488 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 25-401 |
| Cow position: | chr8:14617673-14617302 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 69-400 |
| Cow position: | chr8:33818970-33818645 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 156 |
| Conread position: | 71-402 |
| Cow position: | chr8:18883089-18883423 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 73-262 |
| Cow position: | chr8:952295-952488 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 75-398 |
| Cow position: | chr8:51443291-51442989 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 76-386 |
| Cow position: | chr8:53359692-53359376 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 78-402 |
| Cow position: | chr8:18801509-18801828 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 79-402 |
| Cow position: | chr8:6508007-6507678 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 90-393 |
| Cow position: | chr8:51877673-51877365 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 90-400 |
| Cow position: | chr8:6763996-6763690 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 90-400 |
| Cow position: | chr8:8480371-8480054 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 90-400 |
| Cow position: | chr8:45686165-45685881 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 94-400 |
| Cow position: | chr8:37381428-37381719 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 95-402 |
| Cow position: | chr8:28387485-28387193 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 102-402 |
| Cow position: | chr8:19772779-19773066 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 106-398 |
| Cow position: | chr8:10167147-10167417 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 107-400 |
| Cow position: | chr8:51459909-51460205 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 122-398 |
| Cow position: | chr8:9672193-9672472 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 195 |
| Conread position: | 134-401 |
| Cow position: | chr8:19793387-19793126 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 134-402 |
| Cow position: | chr8:31887973-31888225 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 144-400 |
| Cow position: | chr8:51573345-51573088 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 146-400 |
| Cow position: | chr8:1168106-1167861 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 163-400 |
| Cow position: | chr8:11794548-11794771 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 163-400 |
| Cow position: | chr8:49406360-49406140 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 166-400 |
| Cow position: | chr8:19305410-19305634 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 175-364 |
| Cow position: | chr8:37193345-37193528 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 30 |
| Conread position: | 175-400 |
| Cow position: | chr8:28049159-28048955 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 177-400 |
| Cow position: | chr8:26041009-26040803 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 192-398 |
| Cow position: | chr8:31185622-31185826 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 193-364 |
| Cow position: | chr8:13630206-13630032 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 193-398 |
| Cow position: | chr8:9986174-9986384 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 201-400 |
| Cow position: | chr8:32960199-32960011 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 202-399 |
| Cow position: | chr8:15822035-15822221 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 203-400 |
| Cow position: | chr8:5803578-5803777 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 206-375 |
| Cow position: | chr8:7102487-7102654 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 215-399 |
| Cow position: | chr8:36685669-36685849 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 247-398 |
| Cow position: | chr8:14703121-14702971 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 259-400 |
| Cow position: | chr8:21900125-21900262 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 259-400 |
| Cow position: | chr8:32720367-32720503 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 266-400 |
| Cow position: | chr8:54423310-54423177 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 269-402 |
| Cow position: | chr8:38321012-38321149 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 271-400 |
| Cow position: | chr8:40570584-40570456 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 277-400 |
| Cow position: | chr8:7125593-7125470 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 304-400 |
| Cow position: | chr8:32789789-32789693 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.