Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-318 |
| Cow position: | chr9:35527547-35527234 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 172 |
| Conread position: | 1-325 |
| Cow position: | chr9:53596971-53597299 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 1-383 |
| Cow position: | chr9:7670448-7670082 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 58 |
| Conread position: | 1-394 |
| Cow position: | chr9:4985530-4985917 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 1-399 |
| Cow position: | chr9:34188796-34188425 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chr9:18570558-18570945 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 1-400 |
| Cow position: | chr9:34763020-34763416 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 2-370 |
| Cow position: | chr9:9077274-9077624 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 2-400 |
| Cow position: | chr9:4834821-4834428 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 142 |
| Conread position: | 3-400 |
| Cow position: | chr9:6109716-6109351 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 30 |
| Conread position: | 7-333 |
| Cow position: | chr9:52766615-52766937 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 186 |
| Conread position: | 7-397 |
| Cow position: | chr9:12565201-12564836 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 8-400 |
| Cow position: | chr9:47200393-47200769 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 9-398 |
| Cow position: | chr9:12183552-12183171 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 9-402 |
| Cow position: | chr9:9539411-9539012 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 10 |
| Conread position: | 10-298 |
| Cow position: | chr9:26197814-26198088 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 10-398 |
| Cow position: | chr9:1517480-1517842 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 118, 17 |
| Conread position: | 11-220 |
| Cow position: | chr9:23596424-23596213 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 11-282 |
| Cow position: | chr9:52725534-52725796 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 130, 51 |
| Conread position: | 11-392 |
| Cow position: | chr9:12199086-12199460 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 57 |
| Conread position: | 11-400 |
| Cow position: | chr9:2638504-2638876 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 56 |
| Conread position: | 11-400 |
| Cow position: | chr9:5622205-5622602 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 193, 59 |
| Conread position: | 11-402 |
| Cow position: | chr9:1526976-1527361 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 12-400 |
| Cow position: | chr9:14732135-14731782 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 12-400 |
| Cow position: | chr9:36508270-36508655 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 193, 16 |
| Conread position: | 15-400 |
| Cow position: | chr9:10003874-10003492 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 7, 57 |
| Conread position: | 15-400 |
| Cow position: | chr9:39001580-39001222 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 46 |
| Conread position: | 28-400 |
| Cow position: | chr9:41318183-41318545 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 67-402 |
| Cow position: | chr9:22377024-22376700 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 46 |
| Conread position: | 69-393 |
| Cow position: | chr9:31540140-31540465 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 69-402 |
| Cow position: | chr9:3582845-3583197 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 73, 241 |
| Conread position: | 70-393 |
| Cow position: | chr9:38698254-38697938 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 70-398 |
| Cow position: | chr9:15855268-15855593 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 139 |
| Conread position: | 72-272 |
| Cow position: | chr9:46657874-46658078 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 9, 172 |
| Conread position: | 76-240 |
| Cow position: | chr9:20180873-20180712 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 78-324 |
| Cow position: | chr9:50108842-50108601 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 90-241 |
| Cow position: | chr9:40858932-40859089 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 92-384 |
| Cow position: | chr9:6557567-6557280 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 92-397 |
| Cow position: | chr9:25502761-25503057 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 96-398 |
| Cow position: | chr9:43537062-43536756 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 156 |
| Conread position: | 96-400 |
| Cow position: | chr9:8234343-8234053 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 70 |
| Conread position: | 102-399 |
| Cow position: | chr9:56411390-56411676 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 102-400 |
| Cow position: | chr9:25812572-25812852 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 30 |
| Conread position: | 103-400 |
| Cow position: | chr9:13072101-13071804 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 106-318 |
| Cow position: | chr9:48096457-48096251 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 115-359 |
| Cow position: | chr9:58125907-58125661 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 214 |
| Conread position: | 134-398 |
| Cow position: | chr9:57967048-57967307 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 182 |
| Conread position: | 142-317 |
| Cow position: | chr9:18566724-18566894 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 113, 58 |
| Conread position: | 142-392 |
| Cow position: | chr9:45140591-45140339 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 142-402 |
| Cow position: | chr9:62721149-62721401 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 146-402 |
| Cow position: | chr9:19835693-19835951 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 149-399 |
| Cow position: | chr9:26585398-26585161 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 200, 37 |
| Conread position: | 149-400 |
| Cow position: | chr9:4915375-4915635 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 155-400 |
| Cow position: | chr9:23294318-23294085 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 169-398 |
| Cow position: | chr9:15282844-15282618 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 36, 77 |
| Conread position: | 174-399 |
| Cow position: | chr9:36587043-36587276 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 182-400 |
| Cow position: | chr9:43609347-43609126 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 186, 141 |
| Conread position: | 183-400 |
| Cow position: | chr9:40923000-40923212 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 186-379 |
| Cow position: | chr9:19081946-19082134 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 186-400 |
| Cow position: | chr9:64606083-64606294 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 188-398 |
| Cow position: | chr9:19119573-19119768 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 189-400 |
| Cow position: | chr9:39994111-39994321 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 196-394 |
| Cow position: | chr9:59114093-59113891 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 200-400 |
| Cow position: | chr9:33326240-33326056 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 201-400 |
| Cow position: | chr9:55203025-55203215 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 205-342 |
| Cow position: | chr9:14373748-14373614 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 209-370 |
| Cow position: | chr9:42366454-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 222-397 |
| Cow position: | chr9:35795044-35794876 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 225-393 |
| Cow position: | chr9:26033670-26033830 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 225-402 |
| Cow position: | chr9:56795112-56795279 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 248-388 |
| Cow position: | chr9:35256508-35256369 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 125 |
| Conread position: | 251-400 |
| Cow position: | chr9:416871-416723 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 256-396 |
| Cow position: | chr9:20180321-20180182 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 258-400 |
| Cow position: | chr9:37301926-37301785 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 259-400 |
| Cow position: | chr9:48076143-48076284 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 5 |
| Conread position: | 261-402 |
| Cow position: | chr9:20394655-20394794 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 263-400 |
| Cow position: | chr9:52725803-52725936 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 265-400 |
| Cow position: | chr9:35224539-35224402 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 275-400 |
| Cow position: | chr9:35527055-35526930 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-400 |
| Cow position: | chr9:8779685-8779796 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.