Cow genome map
| Conread name: | rcte04_l7.y1 |
| Conread position: | 1-275 |
| Cow position: | chrX:8558234-8557978 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 133, 66 |
| Conread position: | 1-336 |
| Cow position: | chrX:28939023-28939330 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 202, 57 |
| Conread position: | 1-338 |
| Cow position: | chrX:25106440-25106777 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 61 |
| Conread position: | 1-357 |
| Cow position: | chrX:2700880-2700537 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 135, 17 |
| Conread position: | 1-372 |
| Cow position: | chrX:43647536-43647173 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 1-384 |
| Cow position: | chrX:21885884-21885501 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 1-396 |
| Cow position: | chrX:37956799-37957174 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 22 |
| Conread position: | 1-397 |
| Cow position: | chrX:11675295-11675683 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 69 |
| Conread position: | 1-398 |
| Cow position: | chrX:19127412-19127031 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 62 |
| Conread position: | 1-398 |
| Cow position: | chrX:20504927-20505317 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 1-400 |
| Cow position: | chrX:4590180-4590562 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chrX:6471930-6472324 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 1-400 |
| Cow position: | chrX:9910519-9910144 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 60 |
| Conread position: | 1-400 |
| Cow position: | chrX:16816898-16817255 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-400 |
| Cow position: | chrX:21816489-21816880 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 1-400 |
| Cow position: | chrX:25453410-25453786 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-400 |
| Cow position: | chrX:37980606-37980997 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 1-400 |
| Cow position: | chrX:40353535-40353922 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1-402 |
| Cow position: | chrX:18814398-18814792 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 7-245 |
| Cow position: | chrX:4794262-4794033 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 198, 63 |
| Conread position: | 7-400 |
| Cow position: | chrX:37364647-37365013 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 63 |
| Conread position: | 8-246 |
| Cow position: | chrX:5648252-5648003 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 188 |
| Conread position: | 9-311 |
| Cow position: | chrX:5675779-5675493 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 9-398 |
| Cow position: | chrX:24886551-24886183 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 66 |
| Conread position: | 10-399 |
| Cow position: | chrX:37138042-37137658 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 48 |
| Conread position: | 11-364 |
| Cow position: | chrX:956717-957067 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 11-373 |
| Cow position: | chrX:4597484-4597110 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 11-373 |
| Cow position: | chrX:25921549-25921216 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 11-394 |
| Cow position: | chrX:10462552-10462913 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 11-394 |
| Cow position: | chrX:37067255-37067641 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 11-401 |
| Cow position: | chrX:24203419-24203823 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 12-398 |
| Cow position: | chrX:18700126-18699747 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 32 |
| Conread position: | 12-400 |
| Cow position: | chrX:11982836-11983198 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 58 |
| Conread position: | 13-400 |
| Cow position: | chrX:4625141-4625527 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 56 |
| Conread position: | 14-276 |
| Cow position: | chrX:24201416-24201670 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 123, 15 |
| Conread position: | 15-396 |
| Cow position: | chrX:19018011-19017627 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 15-401 |
| Cow position: | chrX:12688839-12688461 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 20-398 |
| Cow position: | chrX:18467699-18468072 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 20-400 |
| Cow position: | chrX:24952117-24951733 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 182, 46 |
| Conread position: | 21-400 |
| Cow position: | chrX:2186504-2186870 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 40 |
| Conread position: | 54-398 |
| Cow position: | chrX:4631104-4630764 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 69-393 |
| Cow position: | chrX:2147603-2147916 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 69-400 |
| Cow position: | chrX:10534363-10534694 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 69-400 |
| Cow position: | chrX:37236297-37236616 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 70-400 |
| Cow position: | chrX:4601357-4601041 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 71-213 |
| Cow position: | chrX:25653398-25653543 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 72-271 |
| Cow position: | chrX:13060828-13061032 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 76-398 |
| Cow position: | chrX:13403455-13403137 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 177 |
| Conread position: | 76-400 |
| Cow position: | chrX:27458442-27458124 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 173 |
| Conread position: | 79-400 |
| Cow position: | chrX:40698535-40698835 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 81-351 |
| Cow position: | chrX:4948182-4947933 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 95-402 |
| Cow position: | chrX:4440166-4440467 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 37 |
| Conread position: | 96-400 |
| Cow position: | chrX:32456103-32456377 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 103-401 |
| Cow position: | chrX:1330481-1330183 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 106-349 |
| Cow position: | chrX:48428725-48428967 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 122-362 |
| Cow position: | chrX:12227319-12227548 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 138-397 |
| Cow position: | chrX:20957922-20958190 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 145-399 |
| Cow position: | chrX:37749011-37749270 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 146-400 |
| Cow position: | chrX:38892181-38891915 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 77 |
| Conread position: | 146-402 |
| Cow position: | chrX:4019568-4019305 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 147-400 |
| Cow position: | chrX:23253849-23253603 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 150-402 |
| Cow position: | chrX:5956968-5956723 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 87 |
| Conread position: | 158-400 |
| Cow position: | chrX:6672151-6672393 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 169-398 |
| Cow position: | chrX:40350293-40350510 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 180-395 |
| Cow position: | chrX:44248838-44248631 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 180-400 |
| Cow position: | chrX:35552743-35552953 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 183-400 |
| Cow position: | chrX:18518438-18518650 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 189-402 |
| Cow position: | chrX:34100424-34100623 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 201-400 |
| Cow position: | chrX:11851347-11851161 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 204-400 |
| Cow position: | chrX:1427692-1427888 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 143 |
| Conread position: | 206-398 |
| Cow position: | chrX:30784978-30785167 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 215-400 |
| Cow position: | chrX:7022533-7022707 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 242-400 |
| Cow position: | chrX:19391816-19391660 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 243-398 |
| Cow position: | chrX:25653542-25653697 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-400 |
| Cow position: | chrX:34035610-34035756 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-400 |
| Cow position: | chrX:24286533-24286670 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 262-399 |
| Cow position: | chrX:43196156-43196293 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-400 |
| Cow position: | chrX:503085-502949 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 266-398 |
| Cow position: | chrX:25707676-25707547 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 269-396 |
| Cow position: | chrX:30729300-30729173 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-400 |
| Cow position: | chrX:19216433-19216310 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 276-402 |
| Cow position: | chrX:8557702-8557577 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 277-400 |
| Cow position: | chrX:18408229-18408354 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.