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Cow genome map

           
Conread name:
           
rcte16_d7.y1
        

               
Conread position:
               
1-208
               

               
Cow position:
               
chr25:11051044-11051256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 102
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr25:4488397-4488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr25:14103958-14104170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr25:8231221-8230979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
58, 102
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr25:1096238-1096501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
54, 240
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr25:2110745-2111034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr25:24227679-24227369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr25:37687496-37687188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 59
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr25:10137768-10138093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
142, 59
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr25:395018-395355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr25:17354040-17354389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
54, 269
               

               
Conread position:
               
1-345
               

               
Cow position:
               
chr25:2136025-2136382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr25:11830233-11829888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr25:12235095-12234733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr25:9396116-9396474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr25:6891866-6891504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
54, 267
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr25:15319590-15319951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr25:25827122-25827503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr25:12204130-12204510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 196
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr25:11666328-11666689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr25:16866899-16867296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr25:10643647-10643248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr25:3145507-3145906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 154
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr25:4680901-4681292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr25:11437141-11436745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 205
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr25:18294654-18294252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr25:25754334-25753934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
54, 78
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr25:4522156-4521774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr25:30319788-30319385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 287
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr25:8120438-8120852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr25:15273351-15273745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr25:22314862-22315277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
1-394
               

               
Cow position:
               
chr25:30852435-30852840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr25:16064559-16064971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr25:33256031-33256432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr25:9349596-9349199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 145
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr25:21245945-21245519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 105
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr25:23829448-23829030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr25:9055866-9056287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr25:8576361-8576804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
1-429
               

               
Cow position:
               
chr25:10012392-10011949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr25:18000866-18000420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 114
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr25:23410326-23410769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
1-430
               

               
Cow position:
               
chr25:24136782-24136330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr25:10748839-10748389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 77
               

               
Conread position:
               
1-431
               

               
Cow position:
               
chr25:20625268-20624824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 95
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr25:3992451-3992892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
54, 304
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr25:18160974-18161395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr25:11585174-11585632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr25:17658276-17658725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr25:26087177-26087635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chr25:36761777-36762219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
142, 33
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr25:13325263-13325694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
1-434
               

               
Cow position:
               
chr25:26238530-26238977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 271
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr25:11662154-11661702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr25:40957325-40956869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr25:32191330-32191776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 247
               

               
Conread position:
               
2-435
               

               
Cow position:
               
chr25:26225377-26224915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr25:35339998-35340345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr25:27531605-27531209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 193
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chr25:787935-788360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 57
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr25:23389608-23389350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
108, 56
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr25:14791420-14791786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 56
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chr25:12239472-12239099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr25:16922128-16921735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr25:21191154-21191561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 59
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chr25:20496204-20496635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr25:15694649-15694911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
5-343
               

               
Cow position:
               
chr25:2414502-2414836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
223, 55
               

               
Conread position:
               
5-369
               

               
Cow position:
               
chr25:1735645-1735274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 72
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr25:9957369-9956987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
50, 298
               

               
Conread position:
               
5-384
               

               
Cow position:
               
chr25:20403054-20402647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chr25:35347568-35347970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
6-383
               

               
Cow position:
               
chr25:2046885-2046499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
6-384
               

               
Cow position:
               
chr25:6948388-6947994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
6-404
               

               
Cow position:
               
chr25:2126135-2126543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 230
               

               
Conread position:
               
6-433
               

               
Cow position:
               
chr25:10504670-10504227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
6-438
               

               
Cow position:
               
chr25:20076164-20076616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 35
               

               
Conread position:
               
8-440
               

               
Cow position:
               
chr25:18564163-18564607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 294
               

               
Conread position:
               
9-254
               

               
Cow position:
               
chr25:26523648-26523886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr25:6803233-6803608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr25:33959590-33959190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
9-384
               

               
Cow position:
               
chr25:36037121-36036717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
51, 251
               

               
Conread position:
               
9-402
               

               
Cow position:
               
chr25:20020300-20019923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
134, 51
               

               
Conread position:
               
13-431
               

               
Cow position:
               
chr25:18448514-18448922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
17-393
               

               
Cow position:
               
chr25:17975690-17975306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 265
               

               
Conread position:
               
18-431
               

               
Cow position:
               
chr25:22910169-22909749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
20-431
               

               
Cow position:
               
chr25:14570046-14570483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 179
               

               
Conread position:
               
24-217
               

               
Cow position:
               
chr25:13708701-13708900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
25-434
               

               
Cow position:
               
chr25:25051699-25051262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 175
               

               
Conread position:
               
28-214
               

               
Cow position:
               
chr25:21961318-21961122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
31-384
               

               
Cow position:
               
chr25:18721417-18721058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
29, 79
               

               
Conread position:
               
33-430
               

               
Cow position:
               
chr25:15714574-15714984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
38-393
               

               
Cow position:
               
chr25:16319428-16319068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
53-217
               

               
Cow position:
               
chr25:25948681-25948512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
53-384
               

               
Cow position:
               
chr25:6474386-6474025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
53-430
               

               
Cow position:
               
chr25:21895173-21894774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 52
               

               
Conread position:
               
54-285
               

               
Cow position:
               
chr25:10366037-10365786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
56-326
               

               
Cow position:
               
chr25:13798943-13799218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
57-298
               

               
Cow position:
               
chr25:10330676-10330432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 158
               

               
Conread position:
               
57-333
               

               
Cow position:
               
chr25:30035270-30035560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
57-384
               

               
Cow position:
               
chr25:20348576-20348931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
60-213
               

               
Cow position:
               
chr25:19366688-19366535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 81
               

               
Conread position:
               
64-388
               

               
Cow position:
               
chr25:36081600-36081942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
71-399
               

               
Cow position:
               
chr25:34236833-34236500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
71-421
               

               
Cow position:
               
chr25:9990359-9990008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 173
               

               
Conread position:
               
71-431
               

               
Cow position:
               
chr25:8512359-8511981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 52
               

               
Conread position:
               
71-432
               

               
Cow position:
               
chr25:17702231-17701881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
38, 106
               

               
Conread position:
               
72-336
               

               
Cow position:
               
chr25:35625438-35625170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
72-429
               

               
Cow position:
               
chr25:29215653-29215291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
72-435
               

               
Cow position:
               
chr25:14512849-14513231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
73, 33
               

               
Conread position:
               
73-433
               

               
Cow position:
               
chr25:28188216-28187831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
74-384
               

               
Cow position:
               
chr25:35612566-35612251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
74-403
               

               
Cow position:
               
chr25:18130810-18131151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
74-431
               

               
Cow position:
               
chr25:34970214-34970574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
184, 99
               

               
Conread position:
               
74-445
               

               
Cow position:
               
chr25:26700775-26701151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
77-384
               

               
Cow position:
               
chr25:17566325-17566649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
77, 248
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr25:5407488-5407834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
78, 25
               

               
Conread position:
               
77-420
               

               
Cow position:
               
chr25:12778796-12778437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 230
               

               
Conread position:
               
77-431
               

               
Cow position:
               
chr25:40338654-40338996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 84
               

               
Conread position:
               
77-433
               

               
Cow position:
               
chr25:20007878-20008247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr25:5837227-5836895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 219
               

               
Conread position:
               
78-384
               

               
Cow position:
               
chr25:33978462-33978156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
135, 77
               

               
Conread position:
               
78-393
               

               
Cow position:
               
chr25:11131324-11131656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
78-393
               

               
Cow position:
               
chr25:37594153-37594478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
78-404
               

               
Cow position:
               
chr25:40321553-40321203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
78-405
               

               
Cow position:
               
chr25:19679081-19679441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
78-433
               

               
Cow position:
               
chr25:14196594-14196975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 234
               

               
Conread position:
               
78-442
               

               
Cow position:
               
chr25:24452429-24452043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
80-433
               

               
Cow position:
               
chr25:12117245-12116883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
80-438
               

               
Cow position:
               
chr25:33691295-33691667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
81-256
               

               
Cow position:
               
chr25:16400507-16400333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 6
               

               
Conread position:
               
81-434
               

               
Cow position:
               
chr25:7581685-7581312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
82-393
               

               
Cow position:
               
chr25:15254588-15254276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
63, 206
               

               
Conread position:
               
83-329
               

               
Cow position:
               
chr25:35344782-35345038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 219
               

               
Conread position:
               
85-257
               

               
Cow position:
               
chr25:36026753-36026939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
85-405
               

               
Cow position:
               
chr25:38135493-38135836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
89-356
               

               
Cow position:
               
chr25:20211336-20211046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 227
               

               
Conread position:
               
89-367
               

               
Cow position:
               
chr25:33260490-33260777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
52, 198
               

               
Conread position:
               
90-404
               

               
Cow position:
               
chr25:19129604-19129939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
90-431
               

               
Cow position:
               
chr25:24405985-24405622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 223
               

               
Conread position:
               
91-410
               

               
Cow position:
               
chr25:22735875-22736203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 86
               

               
Conread position:
               
92-431
               

               
Cow position:
               
chr25:18265917-18266276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
97-360
               

               
Cow position:
               
chr25:8560627-8560907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
98-404
               

               
Cow position:
               
chr25:15377092-15377411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 151
               

               
Conread position:
               
102-388
               

               
Cow position:
               
chr25:38425128-38425428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
105-256
               

               
Cow position:
               
chr25:6256172-6256007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
105-384
               

               
Cow position:
               
chr25:12081542-12081260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
105-388
               

               
Cow position:
               
chr25:61423-61717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 159
               

               
Conread position:
               
109-384
               

               
Cow position:
               
chr25:6961380-6961091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
143-359
               

               
Cow position:
               
chr25:12755679-12755451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
68, 222
               

               
Conread position:
               
143-384
               

               
Cow position:
               
chr25:5920755-5921006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
143-393
               

               
Cow position:
               
chr25:26090002-26089741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 175
               

               
Conread position:
               
143-405
               

               
Cow position:
               
chr25:16714462-16714183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
143-433
               

               
Cow position:
               
chr25:20785772-20785475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
144-393
               

               
Cow position:
               
chr25:19478506-19478747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
167, 79
               

               
Conread position:
               
144-400
               

               
Cow position:
               
chr25:18905699-18905964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 155
               

               
Conread position:
               
144-433
               

               
Cow position:
               
chr25:17704567-17704858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 124
               

               
Conread position:
               
146-439
               

               
Cow position:
               
chr25:20133495-20133197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
150-346
               

               
Cow position:
               
chr25:26270115-26269913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 142
               

               
Conread position:
               
151-410
               

               
Cow position:
               
chr25:11315731-11315994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
152-365
               

               
Cow position:
               
chr25:36644127-36643915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
152-430
               

               
Cow position:
               
chr25:5972295-5972568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
153-385
               

               
Cow position:
               
chr25:17342276-17342521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 138
               

               
Conread position:
               
153-387
               

               
Cow position:
               
chr25:33786259-33786022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 136
               

               
Conread position:
               
153-412
               

               
Cow position:
               
chr25:13472067-13471809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
75, 136
               

               
Conread position:
               
153-419
               

               
Cow position:
               
chr25:34669070-34669342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 24
               

               
Conread position:
               
153-425
               

               
Cow position:
               
chr25:14467259-14466988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
66, 112
               

               
Conread position:
               
153-430
               

               
Cow position:
               
chr25:13272396-13272680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 139
               

               
Conread position:
               
153-430
               

               
Cow position:
               
chr25:22575694-22575418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
130, 110
               

               
Conread position:
               
153-431
               

               
Cow position:
               
chr25:11989691-11989402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
153-431
               

               
Cow position:
               
chr25:26457857-26457566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
153-431
               

               
Cow position:
               
chr25:29312516-29312226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
65, 140
               

               
Conread position:
               
153-435
               

               
Cow position:
               
chr25:23917668-23917956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
158-384
               

               
Cow position:
               
chr25:10218222-10217987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
158-384
               

               
Cow position:
               
chr25:17914608-17914842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
159-431
               

               
Cow position:
               
chr25:33411087-33411369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
57, 145
               

               
Conread position:
               
162-404
               

               
Cow position:
               
chr25:23355748-23355998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 72
               

               
Conread position:
               
164-430
               

               
Cow position:
               
chr25:21893172-21893449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 36
               

               
Conread position:
               
166-367
               

               
Cow position:
               
chr25:17365422-17365213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 29
               

               
Conread position:
               
166-384
               

               
Cow position:
               
chr25:17991747-17991525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
166-430
               

               
Cow position:
               
chr25:33245770-33246027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
166-431
               

               
Cow position:
               
chr25:27535074-27534807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 137
               

               
Conread position:
               
171-432
               

               
Cow position:
               
chr25:7380999-7380726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
174-413
               

               
Cow position:
               
chr25:22180159-22179920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
177-429
               

               
Cow position:
               
chr25:36501391-36501131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
177-439
               

               
Cow position:
               
chr25:8961621-8961890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
178-433
               

               
Cow position:
               
chr25:30618914-30619177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
182-400
               

               
Cow position:
               
chr25:6687802-6688024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
185-431
               

               
Cow position:
               
chr25:33112113-33111864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 101
               

               
Conread position:
               
188-430
               

               
Cow position:
               
chr25:34379245-34378994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 8
               

               
Conread position:
               
188-433
               

               
Cow position:
               
chr25:22730691-22730942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
190-431
               

               
Cow position:
               
chr25:16691523-16691768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
193-431
               

               
Cow position:
               
chr25:4716138-4716367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
194-432
               

               
Cow position:
               
chr25:9519189-9519432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
54, 23
               

               
Conread position:
               
198-412
               

               
Cow position:
               
chr25:16560309-16560081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
202-431
               

               
Cow position:
               
chr25:6177924-6178145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
202-432
               

               
Cow position:
               
chr25:22751130-22750894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
205-431
               

               
Cow position:
               
chr25:22542919-22542702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
209-430
               

               
Cow position:
               
chr25:12932513-12932737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
210-431
               

               
Cow position:
               
chr25:26240430-26240650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
190, 20
               

               
Conread position:
               
213-430
               

               
Cow position:
               
chr25:14075189-14075414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 109
               

               
Conread position:
               
213-438
               

               
Cow position:
               
chr25:13560318-13560094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
181, 73
               

               
Conread position:
               
223-431
               

               
Cow position:
               
chr25:8080619-8080838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
35, 149
               

               
Conread position:
               
231-415
               

               
Cow position:
               
chr25:13727475-13727292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
242-431
               

               
Cow position:
               
chr25:15358438-15358256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 29
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr25:20811446-20811262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr25:33205155-33204971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 38
               

               
Conread position:
               
254-430
               

               
Cow position:
               
chr25:23248802-23248630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
146, 10
               

               
Conread position:
               
260-431
               

               
Cow position:
               
chr25:18239448-18239620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
277-431
               

               
Cow position:
               
chr25:30021030-30021181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 18
               

               
Conread position:
               
287-433
               

               
Cow position:
               
chr25:13321147-13321296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
300-431
               

               
Cow position:
               
chr25:41094157-41094026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.